Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01521 ATGGATCCACCAAAGAAACTTTACAAGATTAGAGAAATTGTTAGACTTCAACAGATCCTTAAGAAATGGAGAAGGATAGCAAACTCTTCAAAAACAAGCAGAAGTAACAGCAGTAAAAGCAACTTTCTGAAAAGAACACTTTCTATATCTGAACGTGAGGGGGGAGGATCAAGCAACGTGGTTCCCAAAGGCTATCTAGCTGTTTGTGTTGGTGCAGACCTTAGCAGGTTTGTTATACCAACTGAGTATTTGGGTCATCAGGCCTTTCATATATTACTCAGAGAAGCTGAAGAAGAATTTGGGTTTGAACAAACTGGGGTTCTGAGAATTCCTTGTGAAGTATCTGTGTTTGAGAGTATCTTGAAGATAGTGGAAGGAAAGGACAAGTTTTCTACTCAGAAATGTAGATTTAGCATTGAAAAGATGATGGGATACTGCTCCTTAAACCACCTTGCTTATTCTCATCATCCTCAAAGTCCAATGTGCAGATAG 492 0.3902 MDPPKKLYKIREIVRLQQILKKWRRIANSSKTSRSNSSKSNFLKRTLSISEREGGGSSNVVPKGYLAVCVGADLSRFVIPTEYLGHQAFHILLREAEEEFGFEQTGVLRIPCEVSVFESILKIVEGKDKFSTQKCRFSIEKMMGYCSLNHLAYSHHPQSPMCR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01521 163 Pfam Auxin responsive protein 21 123 IPR003676 GO:0009733
Rops10g01521 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 120 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01521 Rops-Chr10 28526658 28527149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01521 5 163 Calmodulin-binding Proteins AT4G31320 50.000 9.71e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01521 K14488 - pvu:PHAVU_009G103800g 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01521 10 28526658 28527149 Rops10g01521 10 28526658 28527149 ECH