Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01508 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAACAAGCTTTGCTTCAACAACAACAGATGTACCACCCTGGCATGCTTGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATCTGCCTCCTGGTTTTGATACTTCTGCATGCCGTAGTGTTTACGTAGGAAATATTCATGTAAATGTCACCGATAAGCTTCTTGCGGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTTATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACTTTGCATGGACGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAACAGTAGGGAGGATACCTCAGGGCACTTCAATGTATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGACATGACAGGTAAATGGCTGGGAAATAGGCAAATACGCTGCAATTGGGCAACTAAGGGTGCTGGTGCCAGCTCCAATGAAGAGAAGAACAATGATAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAACAACCCTTCATACACCACAGTTTATGTCGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGCATTGGGGGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAACGGAAGATTAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGAACAGCTTCAAATCCGCTACCTCCTCCCGCTCAACCATATCAAATACTACCTACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGAAATGGAGCAAGACTCGTTTGAAAGATGGGAAGGTAAAGTTTCAGCGAAGCTCAGAAACAGAACTAAAGAACAAGCATGGCCAATTGTGAAGGACTTCTTCAATCTCCACAAACAGTTCGCTTCCTTGGCCACATGCTACGGGATCCACGGATCTAACGGTAAGCCTGGCTGCATACGATACTGTGCTGGATTCTCCATCCCATCCAACGGCTCTGGGAACGTGAGCTGGTCAAAGGAGAGACTAGTAGCCGTTGATGATGTTGACCTGAGCCTGAAGTATGAGATCGTGGAAAGCAACATTGGGTTCAAGTCATACGAGTCAACTATGAGGGTCATAAGTGATGATGATGATGGTGGCGATGAGTGCTTGATTGAATGGTCCTTCGCAGGGAGGCCAAGCCAACGAATCAGCGTGAGCGTCGCAGGGAGGTTGTGGGTGGGGGAGCGTCGCCGGGAGGCTGTGGGTGGGGGAGCAGCGCTGGGAGGCTGTGGGTGGGGGAGCGGCACAGTGAAGGTATAG 1788 0.4799 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANNSREDTSGHFNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSNEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRLVRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTEMEQDSFERWEGKVSAKLRNRTKEQAWPIVKDFFNLHKQFASLATCYGIHGSNGKPGCIRYCAGFSIPSNGSGNVSWSKERLVAVDDVDLSLKYEIVESNIGFKSYESTMRVISDDDDGGDECLIEWSFAGRPSQRISVSVAGRLWVGERRREAVGGGAALGGCGWGSGTVKV* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01508 595 Gene3D - 1 137 IPR012677 -
Rops10g01508 595 Gene3D - 240 340 IPR012677 -
Rops10g01508 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Rops10g01508 595 SUPERFAMILY RNA-binding domain, RBD 251 344 IPR035979 GO:0003676
Rops10g01508 595 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Rops10g01508 595 SUPERFAMILY RNA-binding domain, RBD 134 235 IPR035979 GO:0003676
Rops10g01508 595 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 339 - -
Rops10g01508 595 Gene3D - 138 239 IPR012677 -
Rops10g01508 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Rops10g01508 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Rops10g01508 595 SMART rrm2_1 263 332 IPR003954 GO:0003676
Rops10g01508 595 SMART rrm2_1 141 214 IPR003954 GO:0003676
Rops10g01508 595 SUPERFAMILY Bet v1-like 444 552 - -
Rops10g01508 595 CDD RRM2_PUB1 139 218 - -
Rops10g01508 595 FunFam Oligouridylate-binding protein 1C 239 340 - -
Rops10g01508 595 FunFam Nucleolysin TIAR-like protein 1 138 - -
Rops10g01508 595 FunFam Lachrymatory-factor synthase 425 562 - -
Rops10g01508 595 SMART rrm1_1 263 332 IPR000504 GO:0003723
Rops10g01508 595 SMART rrm1_1 56 125 IPR000504 GO:0003723
Rops10g01508 595 SMART rrm1_1 141 214 IPR000504 GO:0003723
Rops10g01508 595 FunFam Nucleolysin TIAR-like protein 139 237 - -
Rops10g01508 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Rops10g01508 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Rops10g01508 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Rops10g01508 595 Gene3D - 424 564 IPR023393 -
Rops10g01508 595 MobiDBLite consensus disorder prediction 218 261 - -
Rops10g01508 595 Pfam Polyketide cyclase / dehydrase and lipid transport 442 570 IPR019587 -
Rops10g01508 595 CDD PYR_PYL_RCAR_like 432 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01508 Rops-Chr10 28390471 28401521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01508 56 330 Eukaryotic Initiation Factors Gene Family AT3G16380 27.397 6.36e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01508 K13201 - gmx:100777108 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01508 10 28390471 28401521 Rops10g01508 10 28390471 28401521 ECH