Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01505 ATGGAGCTAAAAAATGAGAAGCTAGTCAGGTTCTCCAATGATGGACAACATGATCTTGAACCTCCTTGGGAAAAGATAGATGCCCACAAACACCATGAGAAGCCATTCCCAGGCTACAAAATTAGTAGTGGTTATAAGAACATAATGAGTATCAGATTTCCCACGTTTGGAAACTTTAAGGTTTTCCCAGAAAATCACGAGCCATGGAAGAAGAGAGTTCTTGATCCTGGCAGTGATATCTATTTGGAGTGGAACCGGGCTTTCCTCTTTTCTTGCATACTAGCACTGTTTGTTGATCCACTGTTTTTCTACCTCCCCTCAGTAGCAAATGATGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAATTGTTGTGACATGTTTCCGGACATTTGCTGATGTTTTCTATCTGCTGAACATGGTCATAAAGTTCAGGACGGCCTATGTGTCACCAAGTTCAAGGGTTTTTGGGAGGGGTGAGCTTGTTATGGATCCCAGGTTGATTGCAAGGCGGTATTTGAGATCAGAGTTCTTCCTAGATCTTGTAGCCACACTGCCTCTTCCCCAGATTGTAATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATAGCAACAATGCTCTTGTACTGATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATTTTCCCATTAAGTTCTCAGATTATTAAAGCCACTGGTGTAGTCACAAAAACAGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAATCCTCCCTCTACAATGTGTTCCAAAGTACTTGGATTGTAGTACTTTAGACAGTGCTGATCGCATGAAGTGGGTAAATACTACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCACCAGTTTCAACTATGGAATTTTTGGAAATGCAGTTGAAAATAATGTTCTCTCCTCTGCATTTATAGAGAAGTACCTCTATTGTCTGTGGTGGGGCTTGCAGACCTTGAGTTCCTATGGCCAGGGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTTATAGCTATTCTAGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTACAATCTATAACTGTGAGGCTTGAAGAATGGAGGCTCAAGAGACGTGACACTGAAGAGTGGATGAGACATCGCCAGCTCCCACAACATCTCAGAGAACGTGTCCGAAGGTTTGTTCAGTACAAGTGGCTTGCAACTCGAGGGGTTGATGAAGAAACCATCTTAAGAGGTCTGCCAACAGATCTACGTAGAGATATCCAACGTCACCTTTGCTTGGACCTTGTTAGACGTGTGCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGATTAGTATCATCCTTGAGTACTCAAGGCACATACATAGTAAGAGAAGGAGATCCAGTTACAGAGATGCTTTTTATCATCAGAGGGAGACTTGAAAGTTCAACCACAAATGGAGGCAGAACTGGTTTCTTTAACTCTATAACCTTGAGACCTGGTGATTTCTGTGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTTAACTTGCCTTCTTCTACAAGAACAGTTAGAGCCCTTGTAGAAGTGGAAGCCTTTGCACTTAGAGCAGAAGATCTTAAATTTGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTACAGCATACCTTCCGTTTCTACTCTTATCATTGGAGGACATGGGCTACTTGCTTCATTCAGGCTGCTTGGCGCCGGTACAAGAAGAGATTGTTGGCAAAGATCCTTAGCTTGAGGGAATGCCAGTCCTTCAATGATGATGAACAAGCCAGGGATCAAATGGAACATGAGGAAAAAGAGCTCAGTGCTGTGACTTCAAAAACAGCACAAGTAAAACAGAACCTAGGTGTCACCATACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGATGCCCAAGTTTCAAAAGCCAGAAGAGCCAGATTTCTCAGCAGAGCCTGATGATGATTAG 2172 0.4236 MELKNEKLVRFSNDGQHDLEPPWEKIDAHKHHEKPFPGYKISSGYKNIMSIRFPTFGNFKVFPENHEPWKKRVLDPGSDIYLEWNRAFLFSCILALFVDPLFFYLPSVANDGNSSCMATDLNLGIVVTCFRTFADVFYLLNMVIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHSNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNEILPLQCVPKYLDCSTLDSADRMKWVNTTSVFGNCNPENSTSFNYGIFGNAVENNVLSSAFIEKYLYCLWWGLQTLSSYGQGLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQHLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWATCFIQAAWRRYKKRLLAKILSLRECQSFNDDEQARDQMEHEEKELSAVTSKTAQVKQNLGVTILASRFAANTRRGVQKIKDVEMPKFQKPEEPDFSAEPDDD* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01505 723 ProSiteProfiles cAMP/cGMP binding motif profile. 482 565 IPR000595 -
Rops10g01505 723 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Rops10g01505 723 Pfam Cyclic nucleotide-binding domain 505 593 IPR000595 -
Rops10g01505 723 Gene3D Helix hairpin bin 410 473 - -
Rops10g01505 723 SUPERFAMILY cAMP-binding domain-like 412 604 IPR018490 -
Rops10g01505 723 MobiDBLite consensus disorder prediction 700 723 - -
Rops10g01505 723 PRINTS EAG/ELK/ERG potassium channel family signature 395 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01505 723 PRINTS EAG/ELK/ERG potassium channel family signature 351 368 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01505 723 PRINTS EAG/ELK/ERG potassium channel family signature 142 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01505 723 PRINTS EAG/ELK/ERG potassium channel family signature 377 388 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01505 723 PRINTS EAG/ELK/ERG potassium channel family signature 445 452 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01505 723 Pfam Ion transport protein 84 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops10g01505 723 Gene3D Jelly Rolls 480 600 IPR014710 -
Rops10g01505 723 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Rops10g01505 723 MobiDBLite consensus disorder prediction 700 715 - -
Rops10g01505 723 Gene3D - 89 408 - -
Rops10g01505 723 SMART cnmp_10 482 613 IPR000595 -
Rops10g01505 723 CDD CAP_ED 482 613 IPR000595 -
Rops10g01505 723 SUPERFAMILY Voltage-gated potassium channels 76 404 - -
Rops10g01505 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01505 Rops-Chr10 28364573 28369077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01505 10 719 Ion Channels AT2G24610 70.990 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01505 K05391 - gmx:100803334 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01505 10 28364573 28369077 Rops10g01505 10 28364573 28369077 ECH