Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01503 ATGGCGGTAGAGTTGATGGGGTTTCCAAAAATAGATGAACAGAAAGCAATACAAGATGCTGCCTCAGAGGGCTTAAAGGGCATGGAGCAACTCATTCGTCTCCTCAACCACCAACCCTCTCATCTACACACTGATCTCACAGACGTCACCGTTTCCAAGTTCAAAAAACTCATTTCCTTACTCAACCGTACCGGCCACGCCCGCTTCCGCCGTGCTCCTCTTCCTTCCTCTTCCCTCCCTCTCCCTCAACCCCAAACTTTAACTCCCTCTTCGCCACCACCGGCTAATCCGGTCACCCTTCACAACCCTCCGTCTAGCTTCGTCCCCACGCAGTCGCAAAGCTTGACTCTTGATTTCTCAAAACCTAACATCTTCAGCTCCAACGCCAAGTCCATGGAGCTCGAGTTCTCTAAGGAAACCACTTTCAGCGTTTCCTCAAACTCCTCTTTCATCTCCTCCGCCATCACCGGCGACGGAAGCGTCTCCAACGGCAAGCAAGGTTCCTCTCTCTTCCTCACCCCGGCAGTCTCAGGCGGTAAGCCGCCGCTTTCATCGACGCCGTTCAAGAAGAGGTGTCACGAACACTCCGACGACGTCTCTGGCTCCAACACCAAGTGCCACTGCATCAAGAGAAGGAAAAATAGGGTGAAGAAGACGATAAGAGTGCCGGCGATTAGTTCGAAGGTCGCCGATATTCCGTCGGACGAGTATTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGGTCGCCATATCCACGGGGTTATTACAAGTGTAGTTCGGTAAAAGGGTGTCCCGCGAGGAAACACGTGGAGCGTGCTTCTGATGATCCAACGATGCTGATTGTAACTTACGAGGGGGAGCACCGTCACGTAATTCAAACCGCGATGCATGAGAACATTTCCGGGACTGTTGGTTTGGTATTCGAGTCAACGTGA 939 0.524 MAVELMGFPKIDEQKAIQDAASEGLKGMEQLIRLLNHQPSHLHTDLTDVTVSKFKKLISLLNRTGHARFRRAPLPSSSLPLPQPQTLTPSSPPPANPVTLHNPPSSFVPTQSQSLTLDFSKPNIFSSNAKSMELEFSKETTFSVSSNSSFISSAITGDGSVSNGKQGSSLFLTPAVSGGKPPLSSTPFKKRCHEHSDDVSGSNTKCHCIKRRKNRVKKTIRVPAISSKVADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSSVKGCPARKHVERASDDPTMLIVTYEGEHRHVIQTAMHENISGTVGLVFEST* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01503 312 Gene3D WRKY domain 219 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g01503 312 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g01503 312 MobiDBLite consensus disorder prediction 69 104 - -
Rops10g01503 312 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g01503 312 FunFam WRKY transcription factor 65 217 294 - -
Rops10g01503 312 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g01503 312 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 295 IPR044810 GO:0003700
Rops10g01503 312 MobiDBLite consensus disorder prediction 77 100 - -
Rops10g01503 312 Pfam WRKY DNA -binding domain 235 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g01503 312 MobiDBLite consensus disorder prediction 172 196 - -
Rops10g01503 312 Pfam Plant zinc cluster domain 189 231 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01503 Rops-Chr10 28338976 28340699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01503 1 311 WRKY Transcription Factor Family AT2G24570 57.447 2.34e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops10g01503 WRKY 3.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01503 - - gmx:100127394 448.743