Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01491 ATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTTCCCAGAAAGGGGACGGGCCATGTGTTTAGAGATGCTGCTAATACTGGAGACCGAAATGGTCAAGTATGCAGCCGCCTAGGTTGCAGTAGCAGAGTCAACTCTCCCAAAGGTACTCAAATTGGTTCCTCTGAAAAGGGTAAATCTTTGAGGCCTTCAATCCAGTCCTCTTCAAATGGCAAGGAAACAATTGGAAGCTCCTCCAGAACTTTTTCCAGGGCTAGAAACCCTGGAAAACCCCATATTAAGCCTCAGAAAACATTATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGAAGTTCCAAAGCTTGTCCCTCCGCCTGAAAAAATTCAGAGAGGGCTTCAAGCTGAAGTGCAAAATGCAGAGTCAGGTAATGTCATGCCGATGGAAGTAGGGAGCTCTAGTTTAGTGTCTAATACAAGATCTCGGAGGAATTTTCATCCAAAGCCTGGATTACATGGTCAAGAAATTAAAGGCACTGGTCCAGTGGCACGTGCTGGTACCAGTAGGTACGGGTTAAGGAACCTCAGATGCAACTCTATTTCTGACGTTGTCCCTGCTGGTTGTTCATCATCAGATTCTACCCTTAACAGAAAGAAGGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGGAAGAAGATGAACGGGTCCTCAATAGAAGGACGGAATTCTGGTTCTAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAACAATCCTCACAGGGACAGGCCAGACAGTAACATAGCATCAGTTAGAACACGAAGATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCACGGAAATGCTAGTCCTGTGGCACCCAATGAGTCCCTTCTCATGATACCTTCTTTTCCTCATTCTGGTAGTCTTAATGCTCCTGATGTATCACATCTTACTTCTCTTGAGACTCCTTCAAGTCATCTGAGCACTTATAGTAGACCAGGTACTAGCAGTGAGGAATTATATGGTGTTATGCCTGGGTCTCCTGCAGAATATGGCAGCATTCATTCTCTAATAAATCGGGATAGCTTTCGACGGCGCTACAACATGGATGGTATTGCGGAGGTGTTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACACGAGCAAATTCTTCTACTGGAGTCCAATTTGTTCCTTTCTGGACTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGAACTGCTGGCTCTGGAAGAGAGGATGGGTACTGTGAACACAGCTCTAACAGAGGAAGAACTATCAGAATGCCTAAAGAGAAGTTTCTATCAATCCTCACCCTCAGATGATGCAGCCACGAGTTGCAATGAGGACAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGTTGCAGATGAAGTTGGAAGTCTGCAATGTGAGCACAAGTATCATGTGGTTTGCATACAGCAGTGGCTGCGGCTAAAGAACTGGTGTCCTATTTGCAAAGCATCAGTGGCATCATCAAATGCTTCCTCATCCCATTAA 1632 0.443 MDGYSGKRAIDGVVVPRKGTGHVFRDAANTGDRNGQVCSRLGCSSRVNSPKGTQIGSSEKGKSLRPSIQSSSNGKETIGSSSRTFSRARNPGKPHIKPQKTLSSQLETDSSETSSVQDEPEVPKLVPPPEKIQRGLQAEVQNAESGNVMPMEVGSSSLVSNTRSRRNFHPKPGLHGQEIKGTGPVARAGTSRYGLRNLRCNSISDVVPAGCSSSDSTLNRKKDMIKKRNCEGESSSTARGKKMNGSSIEGRNSGSRNGISISDSRISRNNPHRDRPDSNIASVRTRRSISGHARGRLSSHGNASPVAPNESLLMIPSFPHSGSLNAPDVSHLTSLETPSSHLSTYSRPGTSSEELYGVMPGSPAEYGSIHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLSGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVNTALTEEELSECLKRSFYQSSPSDDAATSCNEDKDDIKCSICQEEYVVADEVGSLQCEHKYHVVCIQQWLRLKNWCPICKASVASSNASSSH* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01491 543 SMART ring_2 490 530 IPR001841 -
Rops10g01491 543 MobiDBLite consensus disorder prediction 97 118 - -
Rops10g01491 543 MobiDBLite consensus disorder prediction 236 266 - -
Rops10g01491 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 535 IPR045191 GO:0061630
Rops10g01491 543 Coils Coil 394 414 - -
Rops10g01491 543 MobiDBLite consensus disorder prediction 329 348 - -
Rops10g01491 543 SUPERFAMILY RING/U-box 483 535 - -
Rops10g01491 543 MobiDBLite consensus disorder prediction 32 88 - -
Rops10g01491 543 FunFam E3 ubiquitin-protein ligase arkadia 452 536 - -
Rops10g01491 543 MobiDBLite consensus disorder prediction 205 286 - -
Rops10g01491 543 Pfam Ring finger domain 489 531 IPR001841 -
Rops10g01491 543 MobiDBLite consensus disorder prediction 219 235 - -
Rops10g01491 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 537 IPR013083 -
Rops10g01491 543 MobiDBLite consensus disorder prediction 1 131 - -
Rops10g01491 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Rops10g01491 543 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01491 Rops-Chr10 28241723 28245669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01491 387 531 C3H Transcription Factor Family AT2G15530 43.448 3.27e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01491 - - gmx:100787213 808.52