Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01471 ATGGAGGATCAAGCGAATCAAAACGAAAGGCAAGTTCCACAACCGCCACGTGATGAAGAGGAAGATGATTCTAAGAAGGAAGAAGAAGAGTTGATCGCTAAGGTTAACAAGCTTATGGAAAAGATCACTTCTTCTCCTGATAACCCTAAACCTACCGTTCTCCATGCCCTTGCCTCCATTCTTGAAACCCAAGAGTCTCGATACATGGAAGAGAATGGTTATTCTTCCTCCACTAATGCCCGTGCTGCTCATAACATTGGTCGCCTCGGGGGTTTAATCCGGGAAAATGATGACTTCTTTGAGTTAATATCTTCAAAGTTTCTGTCAGAAACTAGATACTCGACTTCCATTCAAGCTGCTGCTACTAGACTTCTCCAATGCTGTTCACTAACTTGGATTTATCCTCATGTTTTTGAAGAATCGGTCGTGGATAACATAAAAATTTGGGTGATGGATGATAACGGAAGATTGTCTGCTGAAGAGCAAAATCTGAAGAATGATCCAGGGAGAAGGGAGGCCTCAGATTCCGAAATGTTGAAAACCTATTCTACCGGACTTCTTGCTGTGTGTTTGGTCGGTGGAGGTCAAGTGGTGGAAGATGTTTTGACATCTGGCTTGTCAGCTAAGCTCATGCGTTATCTTCGTTTGCGTGTGCTGGGTGAGACCAGTAGCAGCCAGAAAGATATTAGTCATTTAACAGAGAGTCGGCATTCATCTGGGAATACTTCAGTGAGAGGTAGAGATGATGGTCGCAATAGGTTTCGCCAGCTTCTGGAATCAAGCCATTTAGATGATACAAGGATGATTGATGAGAGATCTTTAGATGACCCAACTCTTGAAAGGGGTCAGGACAGAAGCATTAGTGGACAAACTTGCCAAGAAGATTCTTGGATAGATGGTGAACCACCTGATGGGCTTGGCGAAGGTGCTGATATCTGCGAGGTAGATTCTGATGGGGAGGATAGATGGCGCTGTAGAGATATACGCGACGGAAGGATAAAATATGGCGAGCACGAAGACAATGCTAGAGATGACTCTTCTAGGCGGCGTGCAAACCGTGGATGGGGAAGACCCAAGGGGAAAGGAAGGGTCAACGAAGGGACTGTAGAAAGTGAACCTGTTTTGTCATCTGCCAGTTCTGGTAGTCGACTAGGACAGGGGCGGAGTGTTAGAGATAGGAGCATATTAAGGAATGCTGATGTTAGGAGGGTGCCTGATTCTAAGAAGACACCTTCCAGGACCACTTCTGAGGCTTCTGTTTTCGAAAGAGAGGATAATGATGATTGTTTCCAAGGGTGCTGTGTTGGAAGTAAAGATATTTCTGATATTGTTCGGAAAGCAGTCCAAGCTGCTGAAGCTGAGGCTAGATTAGCTAATGCACCTGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTTAGAGGAATATAAATCTACCAATGATGAAGAAGCAGCTGTTTTGGCCGCTTCAAGAGCTGCATCAACCGTTATTGATGCTGCATCTGCAGTTGAAGTGTCAAGGAGTTCTGTCTGTATAAATACCGAGACACAGAATGTGAGTGGAAAAGAAACAGAATCTAGCGAGGATGTTGAAGAGTACTTCATTCCAGATACGGAATCTCTTGCACAATTGAAGGAAAAATACTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTCGGCCCCGTGTTGCATGAGAAGGGGGTTGATGTATGTCTTGCGCTTCTGCAGCAGAATTCTAAACATAAGGAGGCATCGAAGGTTGCATTACTGTTGCCTGATGTTATGAAGCTAATCTGTGCTTTGGCTGCACATAGGAAATTTGCTGCACTATTTGTGGACCGTGGGGGAATACAAAAGCTGCTTGCTGTCCCTATAATGGCTCAAACTTTCTTTGGTCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAGCGGGTTTGTGCTCTTCCATCTGATGTTGTTTATCATGTGGTTGAGTTGGCTCTCCAACTCCTTGAGTGCAATCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCATTTGTCTTCAGAGCAGTTCTTGATGCTTTTGATTCTCAGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTCAGTAAGATCAGGAGTAACTTCTGGAGCCTTGGGTTTATCTAACTTAGGGTCACTTCGAAATGATCGATCATCTGCAGAAGCATTGACATCATCTGAGAAGCAGATAGCTTATCACACTTGTGTTGCTTTGCGGCAATATTTCAGAGCACATCTCCTTCTATTGATGGATTTTATTCGTCCAAACAAAAGCAATCGTAGTGCCGCTAGAAATATTCCAAGTATAAGGGCTGTGTACAAGCCACTCGATATTAGTAACGAGGCAATGGATGCAGTATTCCTACAATTACAAAAAGATCGGAAGCTAGGTCCTGCATTTGTGAGAACACGTTGGCCAGCAGTTGAGAAGTTCTTGGCATCTAACGGGCATATTACTATGTTGGAATTGTGTCAGGCCCCACCTGTGGAGCGATATCTACATGATTTGCTTCAGTATGCATTGGGTGTTCTGCACATTGTTACACTGGTACCTAGCAGTCGTAAGATGATTGTAAATGCAACATTAAGCAATAATCGTGTTGGTATAGCGGTAATTTTGGATGCAGCTAACATTGCTAGTAATCATGTGGACCCTGAGATAATTCAACCGGCATTAAATGTTTTAGTCAACCTTGTTTGCCCTCCTCCTTCAATCAGCAATAAACCACCAGTGGTTACACAAGGTCAGCAGTTTGTGCCTTCCCAAACCTCAAATGGTCCTTCCTCGGAGACTAGAGATGGAAATGCTGAACGTAATATCATAGATCGAGCTGTTCATGTCACCAGCCAGATTGATCCCAGGGAGAGGAATGGGGAGTCCAGTGCTGTAGATCGAGGCAGTGCTGCAGTACTTAGTACACAATCTGTTAATAGTACTCCACAAACTCCTGTTCCCACTGCAACTTCTGGTTTGGTTGGCGACCGGAGAATATCTCTGGGTGCAGGAGCGGGTTGTGCTGGCCTTGCTGCACAACTGGAACAAGGATATCGTCAAGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATACACCCCCTGCTGTTCTGGACTGTCTTCGTGCTCTAGCCTGTCGCGTCCTGCTGGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAACTGTCAGAACTAATTCGAGATTCAGGCAGCCAGATGCCTGGAACAGAGCAGGGTAGGTGGCAGACTGAACTTTCCCAGGCTGCAATTGAGCTAATTGGGATTGTGACCAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTGAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCCACTCCAATTACTTACCATTCAAGGGAACTCTTGCTCCTAATTCATGAACACCTACAGGCATCTGGATTGACACAAACTGCTTCTATATTGCTTAAAGAGGCTCAGTTGACTCCTTTGCCATCATTGGTTGCTCCGTCTTCTCTTGCACAACAGCCAACCACACAGGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCCTCAGGATTTCTCACTAACAAATTAAAGTCCAATGCAAAGGATGAGGATGTCAGCTTGAAAAGTGATATCGTCTCTGCAAAGAAAAAATCACTGACTTTCTCGTTATCTTTTGGTTCACATTCAAGACATCAACTTGTTGACTCTCCACAGTCATCAGTCAGAAAAGGGTTTAGTACTGGGAAAGATTCTTCAGAAACTAGTATAGCAGAGACTCCATCTGAATCTTCGTTGAAACATAACATTGATGCTGGATCTCACTATAAGACTCCAACCATCTTGCCAGTGAAACGGAAGTTATCTGATTTAAAGGATACAGCAATATTTTCATCATCTGGGAAGCGACTAAATGTTGGGGATCAAGGACTTCGTTCTCCTATTTATTCAAGTGCAGTTCGTAAAAGCAACCAGCAAACTGATACTGCTGGGCTTTTTACACCAACTTGTAACCTGAGAAGTCAACAAGGCCGTTGTACAGCTGACTATATGGATGAGAATCAGTACAGTATCTCAAATCCAGGTCAGATGACACCATCTTCCCATGTATTAAATGACCTTCAGCCTAACAACCCTGAGCGTGTAACATTAGATTCTCTAGTTATTCAGTATCTGAAGCATCAGCATCGCCAATGCCCGGCTCCTATTACCACTCTTCCTCCACTATCTCTTCTACACCCGCATGTTTGTCCCGAACCTAAGCGAAGCCTCGATGCCCCTTCTAATGTGACAGCTCGCCTAGGTACCCGTGAATTTAAGTTTATGTATGGTGGAGTGCATGGAAATCGCAGGGATCGTCAATTTGTTTTCAGCCGGTTTAGGCCATGGCGCACTTGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTCGGCGACTCTTCTCATATTGCTGTTGGGAGCCATAATGGAGAGCTCAAATTTTTTGACTCCAACAACAACAATGTAGTAGAGAGCTACACAGGTCATCAGTCTCCTGTGACCCTGGTTCGGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTATCAAGATGTTAGGCTGTGGGATGCAATGTCGATTTTAGGTGGTCCTAGCCATTCTTTTGAAGGGTGTAAGGCTGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCTTGACATCAGAATCTGCACGACGGGAAATCCTATTGTATGATATCCAAACATGTCAGTTAGAGTCGAAGTTGTCGGATACATTTGCAACTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCTTCTGATTCAATGCTGCTTTGGAATGGTGTCTTGTGGGACCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGATCAGTTCACGGATTATGGGGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTGTGGGATCTACGCAAGTTCAGACTGCTACGTAGTGTACCTTCATTAGATCAAACGGCAATAACATTCAATGCACGTGGTGATGTAATGTATGCAATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACACGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCTGACATTGCTACTATCCCTGTGGATCGCTGCGTTCTTGATTTTGCAACTGAACCAACAGATTCATTTGTTGGGCTGGTTACCATGGATGATCAAGATGAAATGTATGCATCAGCCAGAGTATATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGAAAGCGAGGAGGAAGATGAGGAGGATGATGATGATGATGATGCTGATATGGATCCCCTTTTAGGCCCCGGTCTCGGTGGCGGAAGTGAGAGTGATGCTGATGACATGAGCAATGACGACGATGAAGATAGTGTAAGTGAGCTCGATGATGATGAGGATGCAGATTTCATTTTGCACGATGAAGACTTTGATGGGGGACCTAGCATATTGGAGATTGTGACAGAAGGAGACGAAGACGATGATGATAATGAATTACTTGAATCTTTAAGTAGTGACGATGAGGATTTTGCGGGTAATGGCTTTGGTTATTGA 5844 0.4447 MEDQANQNERQVPQPPRDEEEDDSKKEEEELIAKVNKLMEKITSSPDNPKPTVLHALASILETQESRYMEENGYSSSTNARAAHNIGRLGGLIRENDDFFELISSKFLSETRYSTSIQAAATRLLQCCSLTWIYPHVFEESVVDNIKIWVMDDNGRLSAEEQNLKNDPGRREASDSEMLKTYSTGLLAVCLVGGGQVVEDVLTSGLSAKLMRYLRLRVLGETSSSQKDISHLTESRHSSGNTSVRGRDDGRNRFRQLLESSHLDDTRMIDERSLDDPTLERGQDRSISGQTCQEDSWIDGEPPDGLGEGADICEVDSDGEDRWRCRDIRDGRIKYGEHEDNARDDSSRRRANRGWGRPKGKGRVNEGTVESEPVLSSASSGSRLGQGRSVRDRSILRNADVRRVPDSKKTPSRTTSEASVFEREDNDDCFQGCCVGSKDISDIVRKAVQAAEAEARLANAPEEAVKAAGDAAADLVKTAALEEYKSTNDEEAAVLAASRAASTVIDAASAVEVSRSSVCINTETQNVSGKETESSEDVEEYFIPDTESLAQLKEKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHKEASKVALLLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPIMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVVYHVVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDSQDGLQKLLGLLNDAASVRSGVTSGALGLSNLGSLRNDRSSAEALTSSEKQIAYHTCVALRQYFRAHLLLLMDFIRPNKSNRSAARNIPSIRAVYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTRWPAVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPPVVTQGQQFVPSQTSNGPSSETRDGNAERNIIDRAVHVTSQIDPRERNGESSAVDRGSAAVLSTQSVNSTPQTPVPTATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYTPPAVLDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQMPGTEQGRWQTELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQTASILLKEAQLTPLPSLVAPSSLAQQPTTQEASSTQIQWPSGRTPSGFLTNKLKSNAKDEDVSLKSDIVSAKKKSLTFSLSFGSHSRHQLVDSPQSSVRKGFSTGKDSSETSIAETPSESSLKHNIDAGSHYKTPTILPVKRKLSDLKDTAIFSSSGKRLNVGDQGLRSPIYSSAVRKSNQQTDTAGLFTPTCNLRSQQGRCTADYMDENQYSISNPGQMTPSSHVLNDLQPNNPERVTLDSLVIQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKFMYGGVHGNRRDRQFVFSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNNNVVESYTGHQSPVTLVRSFVSGETQLLLSSSYQDVRLWDAMSILGGPSHSFEGCKAARFSNSGNVFAALTSESARREILLYDIQTCQLESKLSDTFATSTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLVTMDDQDEMYASARVYEIGRRRPTDDDSDPDDAESEEEDEEDDDDDDADMDPLLGPGLGGGSESDADDMSNDDDEDSVSELDDDEDADFILHDEDFDGGPSILEIVTEGDEDDDDNELLESLSSDDEDFAGNGFGY* 1948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01471 1947 ProSiteProfiles LIS1 homology (LisH) motif profile. 1182 1214 IPR006594 GO:0005515
Rops10g01471 1947 Gene3D - 1516 1841 IPR015943 GO:0005515
Rops10g01471 1947 Coils Coil 21 41 - -
Rops10g01471 1947 SUPERFAMILY WD40 repeat-like 1518 1747 IPR036322 GO:0005515
Rops10g01471 1947 FunFam DDB1-and CUL4-associated factor homolog 1 1514 1841 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 393 410 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 998 1020 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 370 387 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1877 1903 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1825 1839 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 265 282 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 226 251 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 13 28 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1825 1947 - -
Rops10g01471 1947 SMART Lish 1182 1214 IPR006594 GO:0005515
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1 28 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1292 1328 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1840 1862 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 226 240 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 939 1023 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 265 314 - -
Rops10g01471 1947 PANTHER VPRBP PROTEIN-RELATED 21 1945 IPR033270 GO:0016567
Rops10g01471 1947 MobiDBLite consensus disorder prediction 338 352 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 338 421 - -
Rops10g01471 1947 SMART WD40_4 1559 1599 IPR001680 GO:0005515
Rops10g01471 1947 SMART WD40_4 1516 1556 IPR001680 GO:0005515
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1917 1935 - -
Rops10g01471 1947 SUPERFAMILY ARM repeat 673 1121 IPR016024 -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 941 966 - -
Rops10g01471 1947 MobiDBLite consensus disorder prediction 1222 1246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01471 Rops-Chr10 28036589 28045715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01471 1543 1749 U-box Gene Family AT2G33340 24.336 1.03e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01471 K11789 - gmx:100796030 3022.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01471 10 28036589 28045715 Rops10g01471 10 28036589 28045715 ECH