Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01465 ATGTCGTCAACTCTGATTAGAAGACGTTCAACTGGTGAAATAGGGAACTTAGCCTCAGTTTCCAGCAGCCTCTTACCAACATTTGGAACTGCCTCTAAAGAGATTTACTCCAACCTAAGAAAATATGTCATAGCTCCCTATGACCGCAGATATCGGCTTTGGCAAACGTTCCTGGTGGTATTGGTCGTGTACTCTGCATGGGCGTCTGCATTTGAGCTAGCTTTCAGAGAAATGTCAATTGGGTCACTGTTGATCGTTGATCTCGTTGTTGATGTCTTCTTTGCAATTGATATAATCATAACTTTCTTTGTGGCTTACTTGGACACATCAACTTATTTCCTTGTTGATGACCATAAGAAGATTGCTATCAGGTACGTCAAAAAGTTGTACTTTCCCATGGATCTGGCCTCCACTCTGCCATTTCAGCAGATGTACCAAATTATAACAGGCAAACCACACAAGAGCGAGTTCTTTGCTTTCCTAAATATGCTTAGACTCTGGCGATTGAGGCATGTTAGCCAGCTCTTCAAAAGGCTAGAGAAAGACACGTTGATTAGCTACCCAGCGACAAGATTTTTTAAACTTTTATGCGTTACGCTATTTGCAGTGCACTTAGCAGGCTGCATCTATTTTTGGTTGGCTGTTCATCACAAAACACCCGAAAACACGTGGATCGGGATGCAAGTAGAGGATTTTAAACATAGGAGTGTCCGGTTGGGTTACACTTACTCCATGTACTGGTCTATTGTAACCCTTACCACTGTTGGCTACGGAGATTTACATGCAGCAAACACAACGGAGAAGATTTTCAACATTTTATATATGCTGTTTAACATCGGCCTCACTGCATACATAATCGGAAACATGACAAATCTGGTGGTTCATAGCGCTGTCCGAACAATTGCCATGAGGGATGCCTTGAACAACATATTACACTATGCAAGCAAAAGTAGACTCCCAGAAGGTTTGAAGGACCAAATGTTGGCACACATACAATTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGGACCTGCCCAAAGCAATTAGATCCAGTATTGCTCAGCATCTTTTCCACGACATAGTTGAAAAAACATATTTATTTAAAGGAGTCTCTGATGATTTTATCACCCAGATGGTGTCAGAATTGAAAGCAGAATACTACCCATCTAAGGTTGACATCGTCCTGCAAAATGAGATGCCAGCATATTTCTACGTTTTGGTGTCTGGATCAGTGGATGTGATGATATACAAGAATGGAACCGAACAGTTTTTGTTCAAATTAGAACCTGGAGACATGGCAGGAGAAATAGGCATGATGTTTAATATTCCACAACCTTATACAGTGAGAAGTAGAAGGCTATCCCAGGTCATACGAATCAATCATCATCATTTCAGGCAAATGGTGCAGCCGTTTAGTGACGATGGGAAGGCAATCATCCGCAACTTTATTCAGTTTTTGAAGGGCCTAAAAGGCGAGGTGCTAGAAGAACTACCGAATGTAAGAGAGTTGCTGGGTGACCTGCATGATGAGCAGCATCCAACACAAAATGAGGGCACACACGATGAAGTTTCAAGTTATCATGAAGATGGTCCACATGAAGAAGGAAGAACAGAAAATTCCAATCCACAGTCAAACCAAGTCCCCATTAGAGTCAAAATCCATGGACATCATCCCAATGAAAAAAAAATGGGAAACGGAACAACACCAAAGCTCATACTTCTCCCAAATTCAGTCGAAGATCTTTTCAAAGTCGCAGAGAAAAAGTTTGGAAAAAGAGGAAGCAAAATTCTCATGGCTGATGGCTCAGAAGTAGAAGACCTAAACGCCTTAAGAGAGAATGATGAGTTATATATCATCTGA 1875 0.4139 MSSTLIRRRSTGEIGNLASVSSSLLPTFGTASKEIYSNLRKYVIAPYDRRYRLWQTFLVVLVVYSAWASAFELAFREMSIGSLLIVDLVVDVFFAIDIIITFFVAYLDTSTYFLVDDHKKIAIRYVKKLYFPMDLASTLPFQQMYQIITGKPHKSEFFAFLNMLRLWRLRHVSQLFKRLEKDTLISYPATRFFKLLCVTLFAVHLAGCIYFWLAVHHKTPENTWIGMQVEDFKHRSVRLGYTYSMYWSIVTLTTVGYGDLHAANTTEKIFNILYMLFNIGLTAYIIGNMTNLVVHSAVRTIAMRDALNNILHYASKSRLPEGLKDQMLAHIQLKFKTAELQQEEVLQDLPKAIRSSIAQHLFHDIVEKTYLFKGVSDDFITQMVSELKAEYYPSKVDIVLQNEMPAYFYVLVSGSVDVMIYKNGTEQFLFKLEPGDMAGEIGMMFNIPQPYTVRSRRLSQVIRINHHHFRQMVQPFSDDGKAIIRNFIQFLKGLKGEVLEELPNVRELLGDLHDEQHPTQNEGTHDEVSSYHEDGPHEEGRTENSNPQSNQVPIRVKIHGHHPNEKKMGNGTTPKLILLPNSVEDLFKVAEKKFGKRGSKILMADGSEVEDLNALRENDELYII* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01465 624 ProSiteProfiles cAMP/cGMP binding motif profile. 371 490 IPR000595 -
Rops10g01465 624 ProSiteProfiles KHA domain profile. 555 624 IPR021789 -
Rops10g01465 624 CDD CAP_ED 371 484 IPR000595 -
Rops10g01465 624 MobiDBLite consensus disorder prediction 515 551 - -
Rops10g01465 624 MobiDBLite consensus disorder prediction 515 541 - -
Rops10g01465 624 SUPERFAMILY Voltage-gated potassium channels 46 293 - -
Rops10g01465 624 Gene3D - 52 295 - -
Rops10g01465 624 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01465 624 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01465 624 PRINTS EAG/ELK/ERG potassium channel family signature 285 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01465 624 PRINTS EAG/ELK/ERG potassium channel family signature 267 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01465 624 PRINTS EAG/ELK/ERG potassium channel family signature 241 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01465 624 PANTHER POTASSIUM CHANNEL AKT1 17 508 IPR045319 GO:0005249|GO:0006813
Rops10g01465 624 Pfam Ion transport protein 52 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops10g01465 624 SMART cnmp_10 371 488 IPR000595 -
Rops10g01465 624 FunFam Potassium channel KAT2 359 495 - -
Rops10g01465 624 SUPERFAMILY cAMP-binding domain-like 300 490 IPR018490 -
Rops10g01465 624 Gene3D Jelly Rolls 336 493 IPR014710 -
Rops10g01465 624 Pfam KHA, dimerisation domain of potassium ion channel 555 623 IPR021789 -
Rops10g01465 624 Pfam Cyclic nucleotide-binding domain 394 474 IPR000595 -
Rops10g01465 624 FunFam Potassium channel KAT3 53 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01465 Rops-Chr10 27932775 27939365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01465 7 623 Ion Channels AT4G32650 59.809 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01465 K21867 - gmx:100794620 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01465 10 27932775 27939365 Rops10g01465 10 27932775 27939365 ECH