Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01463 ATGGGAGAGGTGGCAGTATTGCACTCTGAGCCTCTGCAGTTTGAGTGCCATGACATGAAACATGTGACTGAGAAAGATGTGTATGATCTACCGTCAATTGAAGAGCACATGCTTGGAGAAGAATCAAGTCAATCAACAGATCACAAAAAGATTGATGAAGAGAGAGGATATATGGAATATGGATGTCAGCATTACCGCAGAAGATGTCGAATTAGGGCTCCCTGTTGCAATGAGATATTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCGACATTGATCAGAAGCATAGACACGACATTCCTCGCCATCAAATCAAACAGGTGATATGTTCACTTTGTGGGACCGAACAAGAGGTTCACAAATACTGTATCAACTGTGGCGTTTGCATGGGCAAGTACTTCTGTGAGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACAATTGCCCCGTTTGTTTTGAGTATTTGTTCGAATCTGTGAATGATGTCACTGTTATGCTTTGTGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCAAAGTCAGTTTGCGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACCCCAATGCCTGAACAATATCTGAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTCCAGTACCATATTGTTGCTCAGAAGTGTTTGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGA 924 0.4232 MGEVAVLHSEPLQFECHDMKHVTEKDVYDLPSIEEHMLGEESSQSTDHKKIDEERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNNIDIDQKHRHDIPRHQIKQVICSLCGTEQEVHKYCINCGVCMGKYFCETCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYSTLLKNSHPCVEGAMHHNCPVCFEYLFESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEQYLNKMVWILCNDCGKTSHVQYHIVAQKCLNCKSYNTRQTRG* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01463 307 ProSiteProfiles Zinc finger CHY-type profile. 55 131 IPR008913 GO:0008270
Rops10g01463 307 Pfam Zinc-ribbon 245 303 IPR039512 -
Rops10g01463 307 Pfam Ring finger domain 197 240 IPR001841 -
Rops10g01463 307 SUPERFAMILY Zinc hairpin stack 134 191 IPR037275 -
Rops10g01463 307 ProSiteProfiles Zinc finger CTCHY-type profile. 133 197 IPR017921 -
Rops10g01463 307 SUPERFAMILY CHY zinc finger-like 59 133 IPR037274 GO:0008270
Rops10g01463 307 Pfam CHY zinc finger 62 143 IPR008913 GO:0008270
Rops10g01463 307 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 38 306 - -
Rops10g01463 307 SMART ring_2 198 240 IPR001841 -
Rops10g01463 307 Gene3D - 269 307 - -
Rops10g01463 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 259 IPR013083 -
Rops10g01463 307 SUPERFAMILY RING/U-box 197 246 - -
Rops10g01463 307 ProSiteProfiles Zinc finger RING-type profile. 198 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01463 Rops-Chr10 27905788 27912121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01463 60 303 C2H2 Transcription Factor Family AT3G18290 38.800 4.16e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01463 K10144 - gmx:100812023 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01463 10 27905788 27912121 Rops10g01463 10 27905788 27912121 ECH
Rops9g01845 9 33272134 33277515 Rops10g01463 10 27905788 27912121 PCT