Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01459 ATGCACGCCAAAACGACACAATCATCGTTTCGGGATCGGACGCAGGAATTTCACACCATCGCGGAGAGGTTGAAGAAATCAGTATCCGGATCAGGATCAAATGGACCAAGCAGTAGTGGTAGTTCTTCATCCAGATCCGATGAACAACGATCTGCTGTTGCAATGCAATCAGAGTTCAATCGAAGGGCTTCCAAGATCGGCTTTGGTATTCACCAAACGTCTCAGAAGCTTGCTAAGCTCGCCAAGTTGGCGAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAAGACATTACTGCTCTAAACTCTGCGGTTGTGGATCTTCAATTAGTCAGCAACTCTAGAAATGAGAGTGGAAACGTTTCTGCCGACACAACTAGCCATTCTACCACGGTTGTGGATGATCTAAAGACCCGATTGATGAGCACCACCAAGGAGTTTAAAGATGTTCTCACTATGAGAACTGAGAACATGAAAGTACATGAGAATAGAAGACAATTGTTTTCGTCCTCTGGCTCTAAGGATTCTGCAAATCCTTTTGTTCGTCAACGTCCATTAGCTACAAGGTCGGCTGCTAGTGCTTCAAATGCCCCTGCACCCCCATGGGCTAGTGGGTCACCATCTTCATCTCAGTTGTTTCCTAAGAAGCAAGGGGATGGGGAGAGTCAACCATTGTTACAACAGCAGCAGCAGCAGCAAGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCAGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGTAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATCTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1029 0.4402 MHAKTTQSSFRDRTQEFHTIAERLKKSVSGSGSNGPSSSGSSSSRSDEQRSAVAMQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHENRRQLFSSSGSKDSANPFVRQRPLATRSAASASNAPAPPWASGSPSSSQLFPKKQGDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLVNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01459 342 MobiDBLite consensus disorder prediction 26 55 - -
Rops10g01459 342 CDD SNARE_syntaxin5 253 331 - -
Rops10g01459 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops10g01459 342 SUPERFAMILY t-snare proteins 56 305 IPR010989 GO:0016020|GO:0016192
Rops10g01459 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Rops10g01459 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Rops10g01459 342 MobiDBLite consensus disorder prediction 197 241 - -
Rops10g01459 342 PANTHER SYNTAXIN 53 334 IPR045242 -
Rops10g01459 342 MobiDBLite consensus disorder prediction 22 55 - -
Rops10g01459 342 Gene3D - 53 305 - -
Rops10g01459 342 SMART tSNARE_6 245 312 IPR000727 -
Rops10g01459 342 MobiDBLite consensus disorder prediction 198 241 - -
Rops10g01459 342 Pfam SNARE domain 286 338 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01459 Rops-Chr10 27840846 27846744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01459 1 342 SNARE and Associated Proteins AT3G24350 65.205 9.78e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01459 K08490 - gmx:100811494 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01459 10 27840846 27846744 Rops10g01459 10 27840846 27846744 ECH