Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01458 ATGCAATTCAAATCGACGCAATCATCATTTCGGGATCGGACGCCGGAATTCCAGAACATCGCAGAAAGGTTAAAGAATTCAGGATCTGCGCCAAATGGACCAAGCAGTAGTAGTAGTACTAGTTCTTCATCCAGATCGGAGGAACAGCGATCTGCCGCTGCAATTCAATCAGAGTTCAATAGAAGGGCTTCCAAAATCGGCTATGGGATTCACCAAACATCTCAGAAGCTTGCTAAGCTCGCCAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATTCAAGAAATTACTAGTGTTATTAAGCAAGATATTACTGCTCTCAACTCTGCGGTTGTTGATCTTCAATTACTCTGTAACTCTAGAAATGAGAGTGGAAACGCTTCTACCGACACAACTAGCCATTCAACCACTGTTGTTGATGACCTCAAGACCAGATTGATGAGCACCACCAAAGAGTTTAAAGATGTTCTAACCATGCGAACTGAGAACTTGAAAGTACATGAGAATCGAAGACAATTGTTTTCGTCCTCTGCCAAGGATTCTGCTAATCCTTTCGTCCGTCAACGTCCGTTAGCTACGAGGTCGGCCGCTAGTGCTTCTAATGCCCCTGCACCCCCATGGGCTAGTGGGTCATCATCTGCATCTCAGTTGTTTCCCAAGAAGCAGGGGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAGCAGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAACTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACAGTGGCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGATGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCCTATTTTTTGTGGCATAA 1026 0.4376 MQFKSTQSSFRDRTPEFQNIAERLKNSGSAPNGPSSSSSTSSSSRSEEQRSAAAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQEITSVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSAKDSANPFVRQRPLATRSAASASNAPAPPWASGSSSASQLFPKKQGDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTVANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01458 341 MobiDBLite consensus disorder prediction 197 240 - -
Rops10g01458 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops10g01458 341 MobiDBLite consensus disorder prediction 1 54 - -
Rops10g01458 341 Pfam SNARE domain 285 337 IPR000727 -
Rops10g01458 341 SUPERFAMILY t-snare proteins 56 304 IPR010989 GO:0016020|GO:0016192
Rops10g01458 341 Gene3D - 52 304 - -
Rops10g01458 341 MobiDBLite consensus disorder prediction 196 240 - -
Rops10g01458 341 SMART tSNARE_6 244 311 IPR000727 -
Rops10g01458 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Rops10g01458 341 CDD SNARE_syntaxin5 252 330 - -
Rops10g01458 341 PANTHER SYNTAXIN 52 333 IPR045242 -
Rops10g01458 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 25 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01458 Rops-Chr10 27837347 27842377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01458 1 341 SNARE and Associated Proteins AT3G24350 64.932 5.89e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01458 K08490 - gmx:100811494 454.907