Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01454 ATGGGTGTGGATTACTATAATATATTGAAGGTGGATAGAAATGCTACGGATGATGATCTGAAGAAAGCTTATAGAAAGTTGGCCATGAAATGGCACCCTGATAAGAACCCCAACAACAAAAAAGAAGCTGAAGCCAATTTCAAACAGATCTCTGAGGCCTATGAGGTATTAAGTGATCCACAGAAAAGGGTGATTTATGATCAGCATGGAGAGGAAGGGTTGAAAGATAGACCACCACCTGATAATGGACCATCAAGTGGGTTTAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGAATTTGGATCATCTGGACCAGGGAGGTCCAAGAGATTTCAGTCTGATGGAGGAGGGGGAACATTTGGTGGATTTGACAATAGTTTTCGAACTTATAGTGAACGGGGGAATATGCCAAAGAAGCCACCACCTGTGGAGAGCAGATTGCCTTGCAGTTTGGAGGAGTTATACACTGGATCGACAAGGAAAATGAAGATCTCAAGGACGGCAATGGATGCTTACGGACGGCCAATTCCAGAGACAGAGATATTAACCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACCAAGATTACATTCCCAGACAAAGGGAATCAGCAAGCAAATCAGCTGCCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTTTTCAAGAGAGATGGCAATGACCTCATTGTGAACCAAAGGGTGTCACTAGCTGAGGCTATTGGAGGGACTTCACTAGATCTCAAAACACTTGATAAACGTACATTAAGTATCCCAGTGACTGACATTGTGAGCCCTGGTTATGAGCTGGTTGTTGCAAATGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATTTGAGGATCAAATTTGAGGTTAACTTCCCTACAAGATTGACACCAGAACAGCGAGCAGGACTCAAGCGAGCATTAGGAGGTTGA 981 0.4363 MGVDYYNILKVDRNATDDDLKKAYRKLAMKWHPDKNPNNKKEAEANFKQISEAYEVLSDPQKRVIYDQHGEEGLKDRPPPDNGPSSGFNPRNAEDIFAEFFGSSPFEFGSSGPGRSKRFQSDGGGGTFGGFDNSFRTYSERGNMPKKPPPVESRLPCSLEELYTGSTRKMKISRTAMDAYGRPIPETEILTIDVKPGWKKGTKITFPDKGNQQANQLPADLVFVIDEKPHDFFKRDGNDLIVNQRVSLAEAIGGTSLDLKTLDKRTLSIPVTDIVSPGYELVVANEGMPITKEPGHRGDLRIKFEVNFPTRLTPEQRAGLKRALGG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01454 326 MobiDBLite consensus disorder prediction 58 92 - -
Rops10g01454 326 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Rops10g01454 326 FunFam Dnaj homolog subfamily b member 146 228 - -
Rops10g01454 326 CDD DnaJ 4 59 IPR001623 -
Rops10g01454 326 Gene3D - 229 325 - -
Rops10g01454 326 Pfam DnaJ domain 4 67 IPR001623 -
Rops10g01454 326 SMART dnaj_3 3 62 IPR001623 -
Rops10g01454 326 FunFam DnaJ subfamily B member 13 3 111 - -
Rops10g01454 326 CDD DnaJ_C 149 312 - -
Rops10g01454 326 MobiDBLite consensus disorder prediction 62 78 - -
Rops10g01454 326 Pfam DnaJ C terminal domain 151 309 IPR002939 -
Rops10g01454 326 Gene3D DnaJ domain 3 112 IPR036869 -
Rops10g01454 326 SUPERFAMILY Chaperone J-domain 3 110 IPR036869 -
Rops10g01454 326 Gene3D - 150 228 - -
Rops10g01454 326 FunFam DNAJ heat shock family protein 229 324 - -
Rops10g01454 326 SUPERFAMILY HSP40/DnaJ peptide-binding domain 232 318 IPR008971 GO:0006457|GO:0051082
Rops10g01454 326 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Rops10g01454 326 SUPERFAMILY HSP40/DnaJ peptide-binding domain 150 231 IPR008971 GO:0006457|GO:0051082
Rops10g01454 326 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 324 - -
Rops10g01454 326 MobiDBLite consensus disorder prediction 108 154 - -
Rops10g01454 326 PRINTS DnaJ domain signature 6 24 IPR001623 -
Rops10g01454 326 PRINTS DnaJ domain signature 62 81 IPR001623 -
Rops10g01454 326 PRINTS DnaJ domain signature 24 39 IPR001623 -
Rops10g01454 326 PRINTS DnaJ domain signature 42 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01454 Rops-Chr10 27776971 27779393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01454 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 1.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01454 K09510 - tcc:18588934 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01454 10 27776971 27779393 Rops10g01454 10 27776971 27779393 ECH