Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01451 ATGAATCCCAGGGTACTCTTGAGAAGATATGGTACTCTTAACAGTCCAAAGAATTCACGACACTTGAGAACCTATAGACTGAAGCTCCTTGTGGAATACTTCAAAATGGCTGTAGATTGCTTTTTTGCTATATGGTTCGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTATTGATGAAGCTCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATCGGTTATGCCATGCCCTTCATTCTATGTGCAACAATCTGCTGCTGTCTGCCTTGTATAATTTCAATCCTTGGGGTTAGAGGGGATCTGACACAAACCCGAGGTGCAACATCTGAATCCATCAATGCTCTTCCAACTTACAAATTCAAGATGAAGAAAAATAACAGCAGGAATGAAAGCAATTCAGCTGTTGGTGAAGGCGGAATTGTGGCTGCAGGAACTGAAATGGAACGTATGATATCTGAAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAACACTGTGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCCCTTTGCAAGAGTGAGGTTGGTGAGAACATAACAGGATTAGTTTCTGAGGAAGATGCCAGCCAACAACGGGCTGAGAGCAGGGTTGAGAGGGGCCTTGCCAATACTTCATCGTAA 723 0.4177 MNPRVLLRRYGTLNSPKNSRHLRTYRLKLLVEYFKMAVDCFFAIWFVVGNVWIFGGHSSIDEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVRGDLTQTRGATSESINALPTYKFKMKKNNSRNESNSAVGEGGIVAAGTEMERMISEEDAVCCICLAKYENNDELRELPCSHLFHKHCVDKWLKINALCPLCKSEVGENITGLVSEEDASQQRAESRVERGLANTSS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01451 240 Pfam Ring finger domain 165 206 IPR001841 -
Rops10g01451 240 FunFam E3 ubiquitin-protein ligase 148 214 - -
Rops10g01451 240 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Rops10g01451 240 MobiDBLite consensus disorder prediction 219 240 - -
Rops10g01451 240 SMART ring_2 165 205 IPR001841 -
Rops10g01451 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 213 IPR013083 -
Rops10g01451 240 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 209 - -
Rops10g01451 240 SUPERFAMILY RING/U-box 155 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01451 Rops-Chr10 27758152 27762263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01451 11 212 C3H Transcription Factor Family AT1G80400 64.878 6.72e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01451 - - gmx:100775815 386.726