Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01449 ATGAATAAAGCAAATAAAATTTGCGCCAGAGATGAAGAGCGTCCAACCAGAATCACCAGAGCAAGGGCTAGAGCCTTGGGATCCTTAGGAGGAGTTCCTCCCTACTCAAGACCCTCCTTTAAAAATGAACATAAAGATGTGACTAGAGGAAATTCCAAAAGAGCAGCTCCGGAAAATGCAGCTTGTGGGGTTGTTCATGCTGTTTCTCAACCCAAAAGAAGGGCAGTGCTTAAAGATGTAACCAACATCAATGCAGAATCACATGATAAGTGTATTAAAGCATCGAAATATCAGACAAGGGGAGTTTACAAGAAGAGAAACGCAACGCTTAATTCAGATGTCTGCAATGAAGTTTCATCCTCACGAGAGGATGTGAGAGCAAAGTTAGCTGAAGAATTATCCACAATATGGATGGTAGAATCGAATGAAACCAATGCTGCGGCAGCTTTGGATGACCAACAGCCAGCGGAACATTGTATGTCCAACAGCATGAGAGAAAGTGTTATGGCAGACACCACCCTTTCAATGCAAGAATCTGTGAAATCTGACGAACTTATGAACTCTCCAAGCACAGATGTAGACATGATTTGTGAAAAGACAGGAGCCTCAGATGGCATGGCCATTGTGGATATTGATTCGGAGTTGAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGATATATACAGCAACATTCGAGTCACAGAGCTTGAAAAGAGACCATTACCCACCTACATGGATCAGTTGCAGCGAGATATTACTGCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTTTGTGAGGAATATAAGTTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAGGAATTTTGCTTCATCACAGACAATACATACACAAAAGAAGAGGTATTGAAAATGGAGTGTGAAGTTCTAAACCTTTTGCATTTTCAGTTATCTGTTCCGACAACCAAAACATTTCTTAGAAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTCGTATTGAACTGGAATTCCTATCAAATTATTTAGCAGAGCTTACTCTCGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTTGTGGCTGCATCTGCTGTATTCCTTGCTAGATGGACCCTCAACCACTCGGAACATCCATGGAATCCAACTCTTGAGCATTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGCTCTGGAAGATCTGCGACTTAATACCAAAGGCTGTCCCTTGAATGCTATACGTGAGAAATATAAACAGCAGAAGTTCAATGGTGTGGCAAATCTGTCTCCAAAACCGGTGCTGTCAGTTTTTCAGGTTCAAGTGTAA 1470 0.419 MNKANKICARDEERPTRITRARARALGSLGGVPPYSRPSFKNEHKDVTRGNSKRAAPENAACGVVHAVSQPKRRAVLKDVTNINAESHDKCIKASKYQTRGVYKKRNATLNSDVCNEVSSSREDVRAKLAEELSTIWMVESNETNAAAALDDQQPAEHCMSNSMRESVMADTTLSMQESVKSDELMNSPSTDVDMICEKTGASDGMAIVDIDSELKDSQVWSSYAPDIYSNIRVTELEKRPLPTYMDQLQRDITASMRGILIDWLVEVCEEYKLVPDTLYLTVNLIDRFLSTSLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMECEVLNLLHFQLSVPTTKTFLRRFIQAAQSSYKVPRIELEFLSNYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWNPTLEHYTNYKASELKTVVLALEDLRLNTKGCPLNAIREKYKQQKFNGVANLSPKPVLSVFQVQV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01449 489 CDD CYCLIN_AtCycA-like_rpt2 356 470 - -
Rops10g01449 489 SMART cyclin_7 360 448 IPR013763 -
Rops10g01449 489 SMART cyclin_7 263 347 IPR013763 -
Rops10g01449 489 SMART Cyclin_C_2 356 479 IPR004367 -
Rops10g01449 489 Gene3D - 227 475 - -
Rops10g01449 489 MobiDBLite consensus disorder prediction 26 57 - -
Rops10g01449 489 ProSitePatterns Cyclins signature. 258 289 IPR006671 -
Rops10g01449 489 FunFam Mitotic cyclin 6 241 341 - -
Rops10g01449 489 SUPERFAMILY Cyclin-like 355 479 IPR036915 -
Rops10g01449 489 PIRSF Cyclin_A_B_D_E 36 488 IPR046965 GO:0016538|GO:0044772
Rops10g01449 489 Pfam Cyclin, N-terminal domain 227 354 IPR006671 -
Rops10g01449 489 SUPERFAMILY Cyclin-like 217 353 IPR036915 -
Rops10g01449 489 Gene3D - 241 354 - -
Rops10g01449 489 PANTHER CYCLINS 183 467 IPR039361 -
Rops10g01449 489 Pfam Cyclin, C-terminal domain 356 478 IPR004367 -
Rops10g01449 489 CDD CYCLIN_AtCycA_like_rpt1 217 352 - -
Rops10g01449 489 FunFam Cyclin A1 343 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01449 Rops-Chr10 27735174 27740080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01449 17 485 Core Cell Cycle Gene Families AT5G25380 54.123 3.35e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01449 K06627 - gmx:547780 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01449 10 27735174 27740080 Rops10g01449 10 27735174 27740080 ECH
Rops9g01861 9 33579356 33585841 Rops10g01449 10 27735174 27740080 PCT