Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01447 ATGGCACTACTGAGAATGGCTCAGCCTCAGCATAACAACAACAATGGCAACAATAACAGTAAGAATCAACCGTTCCTCCATGATTTTCTGGGGGGTATGAAGCCTTTTGTTAATTCTCCCAAAACCGCCGCCGATGTCAGGTTGCCGGAGCCGTCGGCGTCTGTGTCTGCTGCAGCCTCTTCCGCCGGTGCACGTGGTCCCTTCTCCACCACCTCTGATACTGCTTCTGAAAAACAGGTAGGAAATCATCTTGAGGGAGTTCCATTCTATGGCCCGAGAAGTGATTTTTCTGGCACTGAGATAAGTAACAGATTAGTGGGAAACAAGAGAAGTAATTCAGATTCTACTTTTATGGGTTCCTCCAGAGATGCGTTCCAAATGGCCCCTGACTCCTTTCAAAACTCACATTTGATGAAGGTCCTCCGGAATACGGCTGCAGGAGAGAGGTCTAGAAGGCCCAATGATGATGAAATGTTACTTGGTATGCAGTCACTGAAGCCATCTAATGCTTCTCAGTTATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAATGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATCCACCGCGTGGGGGGCAATTGACACCTTTTGTACACCAAATAGCTTCAAACAAGGTTAGGGATAGCAATGCCGGTCCTTCATTCATCTCTCAGTCAGCTGCTGATGAAGGATCAAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACGCAACTGCTACTGCTGCTGAGAAAACCTCATCTGCAGTGCTGCTTGGTGGAAGCAGGCCAAAACCGGTAACTAATATAATAGAATCATCCACACCTCCAAGCAGTCAACAAGGGTTAACGTCTGCCAGCCGCCAGATGACTATTTTCTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCTCATAAGGCAGATGTTATAATGGCTTTGGCGGGGTCAAATGGTGGATCTTGGTCCACAGCATTCTCGCCAAAATCTGCTATGAAGCTGGTTAATGATAGTAACTTGCACAGTGGAGAAAATGAAACAGGTATAGCAAGTAACGTGGCATTGCCGCCGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCATGCCATTGGACCTGGTGATCGAGTATCTACTCCAGCAGGTGCACACCAAGCAAGCATTTTTGCTAAAGATACAAGAAATTCGGCTCAAGCAGCAGATCCCAGTTGTGAAGACAAAAGAGCACAGTGA 1269 0.4665 MALLRMAQPQHNNNNGNNNSKNQPFLHDFLGGMKPFVNSPKTAADVRLPEPSASVSAAASSAGARGPFSTTSDTASEKQVGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDAFQMAPDSFQNSHLMKVLRNTAAGERSRRPNDDEMLLGMQSLKPSNASQLFQPPTSTKIDANKWERSILMNVGPSMQHPPRGGQLTPFVHQIASNKVRDSNAGPSFISQSAADEGSRTGIKGPGILSSINATATAAEKTSSAVLLGGSRPKPVTNIIESSTPPSSQQGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAMKLVNDSNLHSGENETGIASNVALPPELHGKLSITGSSSHAIGPGDRVSTPAGAHQASIFAKDTRNSAQAADPSCEDKRAQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01447 422 MobiDBLite consensus disorder prediction 378 422 - -
Rops10g01447 422 ProSiteProfiles Tify domain profile. 292 327 IPR010399 -
Rops10g01447 422 MobiDBLite consensus disorder prediction 1 27 - -
Rops10g01447 422 MobiDBLite consensus disorder prediction 57 80 - -
Rops10g01447 422 Pfam tify domain 294 326 IPR010399 -
Rops10g01447 422 SMART tify_2 292 327 IPR010399 -
Rops10g01447 422 MobiDBLite consensus disorder prediction 57 79 - -
Rops10g01447 422 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 96 367 IPR040390 -
Rops10g01447 422 MobiDBLite consensus disorder prediction 7 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01447 21 325 Tify Gene Family AT4G32570 39.873 1.03e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops10g01447 tify 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01447 - - gmx:100819293 661.373