Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01439 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATTCATGATTACCTTGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTTTCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTTTGTTCGAGTGGTGGTCAGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCCGAGGTTGCAGCATCTTATATTGAGACACAATTAATTAAGGCAAGGGAGCAACAGCAACAGCAACAACAGCAGCAGCCCCAGCCCCAGCAGTCACAGCATCAACAGCAGCAGCAGCAGCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCATGCACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAACAGCAACAGTCACAACCGCAGCAACAGCAGTCACAACCACAGCAACAGCAAAATAGGGATAGGGCTCATCTCTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCGACAAAGATGTACGAGGAGAGGTTAAAACTTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTTTTGGACCCAAATCATGCCTCAATACTAAAGTCAGCTGCAGCTTCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTTCTGCTGGTGGGATGTCCCCACAAGTTCAGGCTCGTAGTCAGCAATTACCAGGGTCTACTCTGGATATAAAGAGTGAGATTAATCCCGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCGTTAATGGCAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGATGGCCGCTCACGGGTTTGGAGCAACTACGCCCTGGTCTACTCCAGCAACAAAAACCTTTCATACAGGCTCCTCAACCTTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAGCAGCTTATGCTTGCACAACAAAATTTGGCATCACCATCTGCTAGTGAAGAAAGTAGAAGACTAAGAATGCTATTGAATAATAGGAGTATGGGCCTAAATAAGGACGGTCTTTCAAATCCCGTTGGTGATGTGGGATCACCTCTACCAGGTGGAGGCCCTCCTTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGCCAAGCACCAATGCCCAGCAGCAACAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAGGATAAAGTAGGCGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGATCAGGTTTCAAAAAATCAGATTGGGAGAAAGAGAAAACAACCTGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACAACAGGCCCGTCGCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACTCCTGGGGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGCTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGCCATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCTTGCCCCGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCACTTCGCACCTTTACGGGACATTCTACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATTTGCTCTTGTGATGGCGATGGCGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAACCTCGTCTAGGGAGATACCTTGCTGCAGCTGCAGAGAACATTGTGTCTATACTTGATGTGGAGACACAGGCATGCCGCTATTCATTAAAGGGACACACAAAGACAATAGATTCTGTGTGTTGGGATCCATCTGGGGAGTTGCTGGCATCTGTGAGCGAGGACTCTGTGAGGGTTTGGACTCTGGGAACAGGGGGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCGTGTGTTTTCCATCCAACATACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCGTTGGAGCTGTGGAACATGGCGGAGAACAAGACAATGACACTGTCTGCGCATGAAGGTCTAATTACAGCTCTGGCTGTTTCAACTGTAAATGGTTTAGTTGCTTCTGCTAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2706 0.4564 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQHQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQQQQSQPQQQQSQPQQQQNRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGSAGGMSPQVQARSQQLPGSTLDIKSEINPVLNPRAAGPEGSLMAIPGSNQGSNNLTLKGWPLTGLEQLRPGLLQQQKPFIQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRSMGLNKDGLSNPVGDVGSPLPGGGPPFPRGDTDMLMKLKLAQLQQQHQQQPSTNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSLPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRVWTLGTGGEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMAENKTMTLSAHEGLITALAVSTVNGLVASASHDKFIKLWK* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01439 901 Gene3D - 745 901 IPR015943 GO:0005515
Rops10g01439 901 Gene3D - 595 744 IPR015943 GO:0005515
Rops10g01439 901 CDD WD40 617 901 - -
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 869 901 IPR001680 GO:0005515
Rops10g01439 901 MobiDBLite consensus disorder prediction 237 258 - -
Rops10g01439 901 MobiDBLite consensus disorder prediction 463 523 - -
Rops10g01439 901 FunFam Transcriptional corepressor LEUNIG 745 901 - -
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 694 IPR001680 GO:0005515
Rops10g01439 901 Pfam WD domain, G-beta repeat 698 735 IPR001680 GO:0005515
Rops10g01439 901 Pfam WD domain, G-beta repeat 864 901 IPR001680 GO:0005515
Rops10g01439 901 Pfam WD domain, G-beta repeat 619 648 IPR001680 GO:0005515
Rops10g01439 901 Pfam WD domain, G-beta repeat 780 814 IPR001680 GO:0005515
Rops10g01439 901 Pfam WD domain, G-beta repeat 656 691 IPR001680 GO:0005515
Rops10g01439 901 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 816 IPR001680 GO:0005515
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 658 IPR001680 GO:0005515
Rops10g01439 901 Coils Coil 115 148 - -
Rops10g01439 901 SMART Lish 8 40 IPR006594 GO:0005515
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Rops10g01439 901 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 901 - -
Rops10g01439 901 MobiDBLite consensus disorder prediction 374 557 - -
Rops10g01439 901 MobiDBLite consensus disorder prediction 411 452 - -
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Rops10g01439 901 SMART WD40_4 862 901 IPR001680 GO:0005515
Rops10g01439 901 SMART WD40_4 777 815 IPR001680 GO:0005515
Rops10g01439 901 SMART WD40_4 695 735 IPR001680 GO:0005515
Rops10g01439 901 SMART WD40_4 821 860 IPR001680 GO:0005515
Rops10g01439 901 SMART WD40_4 610 649 IPR001680 GO:0005515
Rops10g01439 901 SMART WD40_4 652 691 IPR001680 GO:0005515
Rops10g01439 901 MobiDBLite consensus disorder prediction 531 557 - -
Rops10g01439 901 SUPERFAMILY WD40 repeat-like 615 901 IPR036322 GO:0005515
Rops10g01439 901 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Rops10g01439 901 Pfam LisH 10 36 IPR006594 GO:0005515
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Rops10g01439 901 MobiDBLite consensus disorder prediction 89 119 - -
Rops10g01439 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 869 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01439 Rops-Chr10 27540724 27549798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01439 696 900 Miscellaneous Gene Families AT5G08390 24.762 1.82e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Rops10g01439 WD40 0.0052 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01439 - - gmx:100816263 1288.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01439 10 27540724 27549798 Rops10g01439 10 27540724 27549798 ECH
Rops9g01866 9 33713278 33729623 Rops10g01439 10 27540724 27549798 PCT