Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01429 ATGTCGACGCGTGCAAAGAAGATGTTTGCAAAGTTATGTGGTAGCCACGACGAGGAAGCAGATGATGAGAAGGAAAGGGATCATATTGAGAATATTGATCAGATGTCAAGGGACGATGGTAGCCAATACAGCCTCACCGGCATTCCTCTTCCTCCTCTTGGTGCCACCGCCGCCGCCACCTCCCGGAGACCCAAGCTACGAAGTTCCATTATCTCTCCATATAACCCTCGTTACAGAATCTGGGAGACGTTTCTGGTGTTTTTAGTTTTCTACACTGCATGGGTGTGCCCTTTTGAATTCGGATTCATGAATGAACCAACGGATCCTCTTTCTATCACCGACAATGTTGTGAACGCTATTTTTGCCATTGACATTGTTCTGACCTTCTATGTTGCCTACCTTGACAAGGCTTCATATCTGCTTGTGGATCAACCAAAGTTAATTGCTTTGAGATATGCCAAAACATGGCTCGCCTTTGATGTAATCTCCTGCATCCCTTCTGAATTTGCCCGCAGCGTGTTGCCCAAACCTCTTAAGACTTATGGCTACTTCAATATGCTACGCCTTTGGCGTCTCCGTAGAGTCAGTGCCATGTTTGCAAGATTAGAAAAGGACAGACATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTTCTATTTTCTTGGTGACCATTACAGAAAAGGAACATCATGGCTTTCGCTTGTTACTGATGCCGATGAGAAGGAAATCATGAGTCTCTACGTAACATCAATATACTGGTCCATAGTGACTCTCTCAACTGTTGGTTATGGTGATCTGCATCCTGTAAATACAAAGGAGATGATATTTGACATATTCTTTATGCTATTTAATCTGGGACTTACGTCATATCTCATTGGAAACATGACAAATTTGGTTGTTCACGGGACAAGCAGAACTAGGAAATATAGAGACACAGTGCAAGCTGCCACAGGTTTTGCCCACAGGAATCAGTTACCTATCCGGTTGCAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGACTACAGCAACAAGAGATTATTGACTCCCTTCCAAAAGCCATTCGATCTAGCATCTCACACTACCTATTCTTTTCACTTGTGGACAGAGTCTACTTATTTCACGGAGTGTCACATGACCTGATTTTTCAATTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCACCAACAGACTTTTATATCTTTGTCACTGGTGCTGCGGAACTTATCAGACGACAGAGTGGAAAAGAAGAGGTCGTTGGTGAGGTAAAGTCAGGAGATTTAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAACTGTTTACAGTTCGAACCAAACGATTGAGTCAAATTCTGCGGTTGAATCGTACTACATTTCTCAATCTTGCTCATTCAAATGTTGGAGATGGGACAATAATCATGAACAATTTTCTCCATCATTTGCAAGAATCAAGGCATCCAGGGATGCATGTTGTTTTGGCAGAAACAGAGGCCATGCTGGCTCGGGGTAGAATGGATTTACCCATTAGTCCATGCTTTGCAGCAAATAGAAATGACGATCTATTCTTACATCGGTTGCTGAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAAGACAGCACTGCATATTGCAGCTTCTAAAGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATATGGTGCTGATCCCAATAGCAGAGATTTGGATGGAAATGTCCCACTATGGGAAGCAATGATGGGTAGGCATGAATCTGTCATGAAACTTCTTATAGACAATGGTGCAGACATATCCTTAGCCGATGCAGGCCATCTAGCATGCACTGCTGCCGAGGAAAATAACTTAGAATTGCTCAAGGAACTTGTTCAATATGGTGTGGATGTGACACAACCCAGAAGGACTGGAACAACTGCCCTGCATGCTGCAGTATGTGAAGGAAACGCAGAGATGGTAAAGTTCCTTCTAGACCAAGGAGCAGACATTGATAAGCCAGATGGTAATGGCTGGACTGCCTGGGCTTTGGCAGAAAATCAAGGCCATGAAGATATTAAAACCATATTCCAAAACAGTATAGAGAAGAGAAAAACACCTATTACTCCAATATCAAACGGTGATGGCAAGGTATCTTACATTGGAAGGTTTCAGAGTGAACCAGCTATGCCTGCTACTTCCCAAGAATCCATGACACAACCACCTAATCAAGAGTTGACATGGCTAGATGATCATAGGAGGAGAAGGGCCAACACTTTTCATAATTCCATTTTTGGGATGATCTCAGCTGCCAATCGTGATAAAAAAGACCGCAGGGCAACTGAAAGCAGTAACGCTAGTACAGGGAACTTGGCTGGATTAGTAGCCAGAGTGACACTCAGTTGTCCTGAAAAAGGTGAACATGCTGCAAAGCTTGTTATGCTGCCCAAGTCCCTTCAAGAACTATTAGATATTGGTGCCAAAAAGTTCGATTTCTCTCCCACCAAAATTTTGACTAGAGAAGGAGCTGAAATTGACGATATAAATCTTATAAGAGATGGTGATCATCTTATTATTGCCCGTGACTGA 2664 0.4253 MSTRAKKMFAKLCGSHDEEADDEKERDHIENIDQMSRDDGSQYSLTGIPLPPLGATAAATSRRPKLRSSIISPYNPRYRIWETFLVFLVFYTAWVCPFEFGFMNEPTDPLSITDNVVNAIFAIDIVLTFYVAYLDKASYLLVDQPKLIALRYAKTWLAFDVISCIPSEFARSVLPKPLKTYGYFNMLRLWRLRRVSAMFARLEKDRHYNYFWVRCSKLICVTLFSVHFAACFFYFLGDHYRKGTSWLSLVTDADEKEIMSLYVTSIYWSIVTLSTVGYGDLHPVNTKEMIFDIFFMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIDSLPKAIRSSISHYLFFSLVDRVYLFHGVSHDLIFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFVTGAAELIRRQSGKEEVVGEVKSGDLVGEIGVLCYRPQLFTVRTKRLSQILRLNRTTFLNLAHSNVGDGTIIMNNFLHHLQESRHPGMHVVLAETEAMLARGRMDLPISPCFAANRNDDLFLHRLLKKGSDPNEVDKNGKTALHIAASKGNEHCVTLLLEYGADPNSRDLDGNVPLWEAMMGRHESVMKLLIDNGADISLADAGHLACTAAEENNLELLKELVQYGVDVTQPRRTGTTALHAAVCEGNAEMVKFLLDQGADIDKPDGNGWTAWALAENQGHEDIKTIFQNSIEKRKTPITPISNGDGKVSYIGRFQSEPAMPATSQESMTQPPNQELTWLDDHRRRRANTFHNSIFGMISAANRDKKDRRATESSNASTGNLAGLVARVTLSCPEKGEHAAKLVMLPKSLQELLDIGAKKFDFSPTKILTREGAEIDDINLIRDGDHLIIARD* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01429 887 FunFam Potassium channel KAT3 80 316 - -
Rops10g01429 887 SUPERFAMILY Ankyrin repeat 545 723 IPR036770 -
Rops10g01429 887 SUPERFAMILY cAMP-binding domain-like 319 514 IPR018490 -
Rops10g01429 887 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Rops10g01429 887 PANTHER POTASSIUM CHANNEL AKT1 41 884 IPR045319 GO:0005249|GO:0006813
Rops10g01429 887 SMART ANK_2a 669 698 IPR002110 GO:0005515
Rops10g01429 887 SMART ANK_2a 572 601 IPR002110 GO:0005515
Rops10g01429 887 SMART ANK_2a 605 634 IPR002110 GO:0005515
Rops10g01429 887 SMART ANK_2a 636 665 IPR002110 GO:0005515
Rops10g01429 887 MobiDBLite consensus disorder prediction 10 26 - -
Rops10g01429 887 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Rops10g01429 887 Pfam Ion transport protein 79 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops10g01429 887 Gene3D Jelly Rolls 360 520 IPR014710 -
Rops10g01429 887 PRINTS Ankyrin repeat signature 621 635 IPR002110 GO:0005515
Rops10g01429 887 PRINTS Ankyrin repeat signature 573 588 IPR002110 GO:0005515
Rops10g01429 887 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Rops10g01429 887 Pfam KHA, dimerisation domain of potassium ion channel 822 884 IPR021789 -
Rops10g01429 887 Gene3D - 79 315 - -
Rops10g01429 887 SMART cnmp_10 394 511 IPR000595 -
Rops10g01429 887 ProSiteProfiles Ankyrin repeat region circular profile. 669 700 - -
Rops10g01429 887 CDD CAP_ED 394 499 IPR000595 -
Rops10g01429 887 ProSiteProfiles KHA domain profile. 822 887 IPR021789 -
Rops10g01429 887 Pfam Ankyrin repeats (3 copies) 546 636 IPR002110 GO:0005515
Rops10g01429 887 Pfam Ankyrin repeats (3 copies) 644 727 IPR002110 GO:0005515
Rops10g01429 887 Pfam Cyclic nucleotide-binding domain 414 498 IPR000595 -
Rops10g01429 887 SUPERFAMILY Voltage-gated potassium channels 73 315 - -
Rops10g01429 887 ProSiteProfiles Ankyrin repeat region circular profile. 605 636 - -
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 306 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 288 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 PRINTS EAG/ELK/ERG potassium channel family signature 262 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops10g01429 887 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g01429 887 ProSiteProfiles cAMP/cGMP binding motif profile. 394 495 IPR000595 -
Rops10g01429 887 Gene3D - 542 724 IPR036770 -
Rops10g01429 887 FunFam Potassium channel KAT2 382 518 - -
Rops10g01429 887 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01429 Rops-Chr10 27403307 27409747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01429 33 887 Ion Channels AT2G25600 60.209 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01429 K21867 - gmx:100802964 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01429 10 27403307 27409747 Rops10g01429 10 27403307 27409747 ECH
Rops9g01885 9 34368229 34374954 Rops10g01429 10 27403307 27409747 PCT