Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01420 ATGGATTCCTCTGAACCTTCCAAGAACAAGAAAGAGGAGGGCAAGCCTTCTTCATCACAACGCTCTCCTGAGGAATCCTCCCCCGATGTCAGTTTCCTATACAATTTATCTCCAATAAAGCAGCCTGACAACACCACTTTTGATTATGAGGATTTCTTTTCATGTGATGAACTCAATTTTGCGCATTGTCTTGATTTATCCACTGAAACTGAAAGTGACATTAATGGAGGCCAGCAACCAAGTGAAGAGCCTTATAATACCAAGAATTCGAGTCTTGGGTCAGAGGAGCCTACGACGGTTCATCAAGAAAACCAAGCATATATACAGAATCTTGAATGGCCTTCACCAGAACAGAGAGAGGCAGAGTCGTTTGCAGACGCTGTTTTAGAGAAACCATGTTGTCATGATTCACCTGCCCAGATAATGCGTTCATTGTTTCCTGACAAAATTTGTCTCTGTCTCAAAAGTGACTTTATTGGTGGAGACAAGGGTCTAATTGAAGATCCTTATCATACCAATGATTTGATTCTTTGGTCAGACGAGCCTACAACGGTCCATCAAGAAAACCAAGCATATGTTGATGAACTGGAAAATTTGCAGAGTGTTGAATGGCTTTTTCCAGAACAGAGAGAGGCAGAGTCGTTTGCAGATGCTGGTTTAGAGAAACCACATTGTCATGATTCATACTTTCCAGAAGAACCAGGATCATCAGCTCCCTTGGATGGAAATTATCCTGTTCCGGGTTCCAGAACACCATACTTTGGGTTGCATTTAAATAGCCTCATGAATATTGGATTGGAGGGTAAGCCCAAGAGTACAAAATTTATACTGGAATTCTCACAAAATATATACAAGCAATCAACAGTTCACATTGCCAGACTTGACACTGTAAACGAGAGGCATGAAATTGATTCTTCAGTAGCTGCAGATATTGTCAAACCTCAGTCTCCTACCATTATAGAACCTTTCAACTCCTCATCATATCCTACTTCAAGAGTCCATGCAATTGACACACCTGAGCCTCCTACCACTATAGAACCTTTCACCTTTTTATTCTGTCCTGAAACTGCAAGTGTCCATGCAGATATTGTCACCTCTGAGTCTCCTAGCATTGTAAAACCTTTCACCTCATCATCACTTCCTGCAAGTGTCCATGATAACAAGACAATAAGCACAACAGATGCCAAGACTGGGAATTCTGAGGAATTTAACCAACCTGATCCCAAGAAGTCAAAAAACAGAAAATCAAACCCCACTGACAAAGACACGGATGACTTCATTAAAAAATGTACATGCAAGAAGAGTGCATGCACGAAACTTTATTGTGATTGTTTTGCTGCCGAGCTTTATTGCACCAAGTCTTGCAGTTGCCAAGGCTGCTTGAATAGATCAGAACATGAAGAGAAACTTAATAAAATTAAGAACCAAATTAAATTCCGTAATCCAATTGCATTTGCTCCCAGGGTTGTACAGGATGCCACTGATACTCCATCAAATAAAACGGAGACTGACAATAATCTGAAGACAGGCAGGCACAGAAGTGGTTGTAGATGCATAAAGTCAAAGTGTCTTAAAAATTATTGTGAATGTTTTGAGGTTGAGGTTGGATGCTCCAGTGCTTGTCGATGCGAGGGATGTGAGAATTCCTATGGCAAAAAAGGAGGTCATGTTGCAAAGGAAGATGCTTTGAATAAAGAAAAGGATAGTGAGGGGGTTGAAAACCCACAGACCATGATTCCTGGTGCTCCACAGGGAAGTAGCTCTTCAACAATGCTAATTACCCCCCCAACGACTAGATTAGAGGAAGTCCCGAATTTAGAATTGAGGAGCTCTTCATGTGGCTTGATAAAGGGTAGGAAATTTATAATCAAAAGTGTGCTTTCTTTCCCACCATTAACCCCTACCATTGATTCCAACGACAATGGTAACGGTGGCAGTGACGGAGCCAAGGAGCCAGAGAGAAGATTATAA 1971 0.4135 MDSSEPSKNKKEEGKPSSSQRSPEESSPDVSFLYNLSPIKQPDNTTFDYEDFFSCDELNFAHCLDLSTETESDINGGQQPSEEPYNTKNSSLGSEEPTTVHQENQAYIQNLEWPSPEQREAESFADAVLEKPCCHDSPAQIMRSLFPDKICLCLKSDFIGGDKGLIEDPYHTNDLILWSDEPTTVHQENQAYVDELENLQSVEWLFPEQREAESFADAGLEKPHCHDSYFPEEPGSSAPLDGNYPVPGSRTPYFGLHLNSLMNIGLEGKPKSTKFILEFSQNIYKQSTVHIARLDTVNERHEIDSSVAADIVKPQSPTIIEPFNSSSYPTSRVHAIDTPEPPTTIEPFTFLFCPETASVHADIVTSESPSIVKPFTSSSLPASVHDNKTISTTDAKTGNSEEFNQPDPKKSKNRKSNPTDKDTDDFIKKCTCKKSACTKLYCDCFAAELYCTKSCSCQGCLNRSEHEEKLNKIKNQIKFRNPIAFAPRVVQDATDTPSNKTETDNNLKTGRHRSGCRCIKSKCLKNYCECFEVEVGCSSACRCEGCENSYGKKGGHVAKEDALNKEKDSEGVENPQTMIPGAPQGSSSSTMLITPPTTRLEEVPNLELRSSSCGLIKGRKFIIKSVLSFPPLTPTIDSNDNGNGGSDGAKEPERRL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01420 656 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 245 574 IPR044522 GO:0003700
Rops10g01420 656 MobiDBLite consensus disorder prediction 383 402 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 403 422 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 20 40 - -
Rops10g01420 656 ProSiteProfiles CRC domain profile. 426 551 IPR005172 -
Rops10g01420 656 MobiDBLite consensus disorder prediction 1 19 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 631 645 - -
Rops10g01420 656 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 514 549 IPR005172 -
Rops10g01420 656 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 428 463 IPR005172 -
Rops10g01420 656 MobiDBLite consensus disorder prediction 564 589 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 630 656 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 70 98 - -
Rops10g01420 656 SMART CXC_2 428 466 IPR033467 -
Rops10g01420 656 SMART CXC_2 511 552 IPR033467 -
Rops10g01420 656 MobiDBLite consensus disorder prediction 1 40 - -
Rops10g01420 656 MobiDBLite consensus disorder prediction 383 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01420 Rops-Chr10 27310639 27314658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01420 406 583 CPP Transcription Factor Family AT3G22760 41.209 5.87e-41 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops10g01420 TCR 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01420 K21776 - sspl:121751118 199.134