Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01419 ATGGATTCTCTTGAGGCTTCTAGGAAGGAGTACACCTCGTGCTCCCCTTCATCGTCTGATTCTCTCTTTCGCGCATATTTAAACGATTTATCTCCAATGAGGCAACCTCTCAAGACTTGTCAAAACCTTCTTTCTTCATACTGTTTACTTGACGACCTTGATTCTGCATACGTTGATGGACCAGAAAAGATGCAAGATATTGAATGGCCTTTTCAAGATTGCAGAGAAGTAGAGTCCTATTTGTTTGCAGACATGGATGATTCAACTGCCCAGCGTGCAGATAATGAATGGCAAAATCTTCAAGAATGTAACCCCCAGTTGAAGCAAGAATCTCTGCCGGCTGTTAAAGAATGTGAAGACTATGGTGAGATGGTGCCAGTCTCACACATAAACTCAGAGAACATGTTAAGAGATAGTTCTGAGGCTAGTGAAAAACAGTGTGTCGATAGACATGGCTTTCAATTTGAGGGAGATGCATCAAGTTCTTGTGGAAGTGAAGAAATCGAACTCATTGATAATCCTTATGGTTTCATGAGACTGAGTGAAGACCATTTGCTTTTCTCTAAGGAATTTAAGACGGTTCAGCTAGAAAAACCAGCATATGTTGATGAATCAGGAAAAATACAAGATGTTGAACGGCCTTCTCAAGATTGCAGATTGGCACAGACCAATTTCTTTGCAGATGATGTTTCAGAGAAACAACATTGTCATGATTCAGTTGCCCAGCTTGCAGTAAATAAATGGCAGGATCATCAAGATTGTACCCCAATGTTGATTACAAAACCAATGCTTAATGTTATAGAATATAAAAATTGTGGTGGGATGGGGTCAGCCTTACACTTAAGGGCAGAGATCAAGTTGAGCGATGGTACCACTGAGGATGGTCAAAAGCACGGTCTCGTTAGATGTCACCTTCGATATGAGGAAACTGCATATTCTCCTGAAAGTATTAACTCCCCAATTGCCGCACATAGTCCAGAGGATTCAACATCATCAGCTTCTTTTGAGGCATGGAATTCGAATTCAGGTGAAATGAAAATGGCCAAGCTGTCCAAAGACTCGGAACCTACAACTTCCTTGCATCTAATTGCAAGAGTCCATGCAGATATTGTCACCTCTGAGTCTCCTACCATTATAGAACCTTTCACCTTATCATCACTTCCTGCAAGTGTTCATGATAACAAGATAATAAGCACAACAGATGCTGGGACCGGGAATTCTAAGGAATGTAACCAACCTGCACCCAAGAAGTCAAAAAAAAATCCAAACCCCACTGACAAAAAATGTACCTGCAAGAAGAGTGCATGCACGAAACTTTATTGTGAATGTTTTGCTGCCGATCTTTATTGCACCGAATCTTGCGGTTGCAAAGGCTGCTTGAATAGATCAGAACATGGAGAGAAAGTTAATAATATTAAGAACAAAATTAAATTCCGTAATCCATTTGCATTTGCTCCCAAGGTTGTACAGGATGCCACTGATACTCCATCAAATAAAACGGAGAACGACAATAATCTGAAGACATCGGCATCAGGCAGGCACAGAAATGGCTGTAAATGCTTAAAGTCAAAGTGTCTGAAAAATTATTGTGAATGTTTTGAGGCTGCGGTTGGATGCTCCAGTGCATGTCGATGCGAGGGATGTGAGAATCCCAATGGGAGGAAAGAAGGTATGCCTTTCTCCCTTCCACTTCAACACCCTCGGGATTGTGAACGTCCTCCTGCTTCTACTCATCAAGGTCAAGTTGCATTGGAAGATGCTTTGAGTAAAGGAAAGAAGAGCGACGGGGTTGAAAAACCATCAGATTTATTACATGCAGAATTGAATGGCTATGATGTGCATGGCCTCTCACCTCTAACACCGTCTTTGCAAAGCTCCAACATGAACCAAGCAGTTATCAACGTAAGTCTGGTTACTCCACAGACGATGATTCCTGGTGCTCCACTGGGAAGTAGATCTTCCCCAATGCTAATTACCCCAAATCTAGACTGTCTTCAATCGAGTAGCTCTTCACGTGGCTTGATAAAGGGTGGGAAATTTATATTCAAAAGTGTGTTTTCTTTCCCACCATTAACCCCTCACATTGATTCCAAAAACAAAGGTGACGGTGGTAGTGACGGAGCCAGGGAGCCATAG 2136 0.4199 MDSLEASRKEYTSCSPSSSDSLFRAYLNDLSPMRQPLKTCQNLLSSYCLLDDLDSAYVDGPEKMQDIEWPFQDCREVESYLFADMDDSTAQRADNEWQNLQECNPQLKQESLPAVKECEDYGEMVPVSHINSENMLRDSSEASEKQCVDRHGFQFEGDASSSCGSEEIELIDNPYGFMRLSEDHLLFSKEFKTVQLEKPAYVDESGKIQDVERPSQDCRLAQTNFFADDVSEKQHCHDSVAQLAVNKWQDHQDCTPMLITKPMLNVIEYKNCGGMGSALHLRAEIKLSDGTTEDGQKHGLVRCHLRYEETAYSPESINSPIAAHSPEDSTSSASFEAWNSNSGEMKMAKLSKDSEPTTSLHLIARVHADIVTSESPTIIEPFTLSSLPASVHDNKIISTTDAGTGNSKECNQPAPKKSKKNPNPTDKKCTCKKSACTKLYCECFAADLYCTESCGCKGCLNRSEHGEKVNNIKNKIKFRNPFAFAPKVVQDATDTPSNKTENDNNLKTSASGRHRNGCKCLKSKCLKNYCECFEAAVGCSSACRCEGCENPNGRKEGMPFSLPLQHPRDCERPPASTHQGQVALEDALSKGKKSDGVEKPSDLLHAELNGYDVHGLSPLTPSLQSSNMNQAVINVSLVTPQTMIPGAPLGSRSSPMLITPNLDCLQSSSSSRGLIKGGKFIFKSVFSFPPLTPHIDSKNKGDGGSDGAREP* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01419 711 MobiDBLite consensus disorder prediction 491 513 - -
Rops10g01419 711 SMART CXC_2 424 465 IPR033467 -
Rops10g01419 711 SMART CXC_2 513 554 IPR033467 -
Rops10g01419 711 MobiDBLite consensus disorder prediction 398 419 - -
Rops10g01419 711 MobiDBLite consensus disorder prediction 316 336 - -
Rops10g01419 711 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 11 634 IPR044522 GO:0003700
Rops10g01419 711 MobiDBLite consensus disorder prediction 398 428 - -
Rops10g01419 711 ProSiteProfiles CRC domain profile. 425 553 IPR005172 -
Rops10g01419 711 MobiDBLite consensus disorder prediction 491 512 - -
Rops10g01419 711 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 427 462 IPR005172 -
Rops10g01419 711 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 516 550 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01419 Rops-Chr10 27303471 27308802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01419 408 694 CPP Transcription Factor Family AT4G14770 34.545 3.35e-40 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Rops10g01419 TCR 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01419 K21776 - gmx:547664 215.698