Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01411 ATGTCTGGACCGATCGATCCCATCAGCAAGGTTTGTACGGGGCGTGAGGCTTGGAGATTGAAGGTCAGGATCGTTAGGCTTTGGTGTGTTCCAATGTTTGGTAATACATCCCAGATAAATTCCATCCAGATGGTTTTCATGGATGAACATGGAGAAAGGATTCAAGCTTCAGTGAAGAATACACTGTTGTACAAGTTCAAGCATTTTCTCCATGAGGGATCTGTCTTTATCTTCACTCATTTCACTGTTATTCCCAATGTTGGGATGTACATGGCAACTTCACATTCCTTTCGGTTGCTTTTTACATTTAAGACTAAGTACTCTGTGGCTGAGTCTTCTATTATTCCTTTGCTTGGATTACGTTTGGTTCCGTTTGATGATGTGCTTAAAAATGATCGTGACTCTGATTATTTAATTGACGTTATTGGTGTGTTGACTTCTGTTTCCTCGGAGAAAGACATTGAAAGGGATGGGAAATTGTCCAAGATGATTGTTATAGAGTTGACTTCAGATAAGGGTAAATTGGAATGTGCTCTGTTCGGTGATTATGTTGGGACCTTGATGGATTTTGTTGCTGTGGGTGTCAATGAGCATCCAGTGGTGATTATTCAATTTGCGAAAGTAAAGTTGTTTAGAGGCAAGATAGTGCTTCAAAATGTCATGCATGCAACTCGGCTGCTGTTTAATCCTGATGTTGCAGAAGCTGTCGACTTTAGGAATGGGATTGCTGAACATGGAGTTATTGATGATGTTCCTCTTCTATCTGGGACTGATTCATTTGGTTTGTCTGCTGAGGATGAGTTTATGAAGTTGTACCCTAAGAAATCTTTGAAGCAGTTGCATGGTATTTCTGAGCTGATTGTGAATGCCAGAGATGATACTGGTGATGGCATGTTTGTTATTTTTGATCGTGATGCTCAGTATTTGCTGAAGAAAGAGTGTGGTGATTTATTGTTTGAAGAGAAGAAGTACTTGACTGGTGATGAAGTTCCTGGACTCTTTGATGGGTTGGTTGGGAAAAGATTGTTATTTAAAATTGAGGTTATCGTTGACAAATCTGTGCATTATGATGGTTCATTTCGTGTTAAGAAAGTCTGTGATGATGAATGTGTGATTTCTATGTATATGTTGAATGGTGCTGAGTGTACTCCATCAAAGTCAACTTTCAAGGTTCCTTTCACTTCCATTGATGATTCTACACCCAGTGGAGTGGGAGATGATGGGGATTTGTCTGAGCAATGTCAAACAGAAGTTGATGTTACCCCTTTTGATGGTGGTAGTTCTACTTCTCATTCTGCTTCTGTGTCTGTCAAGCGGAAATTAGAGAATAGCTATGTGGTGAATGGTGATGATTCCAATGATATATTTCCCAAGGATCTTCAGAAAGATATGGAGGATGTTTGTGATGTTGATCAGTACCTTTCGTTGGACAAATTAGAGTGTTCAATTGATGATAATAAAAATAATGTTGGAGTTCCTAGCTTGAAGATGGTCAAGGTGGAATCTATGTCGCCATCGAGCACAAGAGGACGGTTTAGTGGTTCATCTGTGTTAGATGGTGAAAGTTCCAGATTTACATTCTATGATGTTGATTTCTCATCTTATCGTGCAAGTCATTTGTTTGATGAGGGTGATGATGCGGTTGATCTCATGCTAAATGTTGAACAAGAATCCTTGATAGAACATGTTTTGTTCCTACCTAGCGAGGATGAAGTGTGTCTTGATTTAGGTGATAATGTTTTTAGTTGTGCGAATTGTGGTGCCATGACTTGGTATGAAGAACGTTCTGATAAGTCTAACCAGAATAGCAATCCTCAATTCTCAATTTGTTGTATGAAAGGAAAGATAATTCTTCCTTATTTGAGTAGACCACCTGAGTTGATATGGAATTTGGTCAATGGATTTGATGCTCGGAGTGTACACTTTATTGAGAACATTCGGTCCTACAATAGTATGTTTGCTTTTACTTCGATCGGTGGCAAGATAGAAACGAATTTTAATAATGGTGGTGGTCCTCCTCAATTTATTCTTAGTGGCCAGAATTTTCACAGGATTGGTTCATTGTTACCTGTTGATGGTGAAAGGCCGAAGTTTTCCCAGATGTATATTTATGATACAAGCAATGAGGTCTCAAATAGGACGACTGTCTTTAGGTTGTCCACACTGATGTCGTGGAGGCGATGTGGTTGTGAAGATTCCCATTCATCACGAGTATTTGAGTTCCATGAAGGTGCCAAGGAGATTAATCAGGAATGGTATTCTGCGGGTGAAAGATGGAACAAAGTCTTCAAGATTAGGATAAATGGTCCTGATCTTTTGGATATTAATTATAAGGTGGGTGAAGATGGTCCTTTTGTTGGAGGTGTTAGTGGGAATGACAATGTTGGTGGTGATGGTAGTGGTATTCCTAATCAGTTTCAGCTTTTGTGGTCTGTCCAATTATCTGAAGCCCAAGCGTCTGGTCGTCAGACTCTTTACATTCCTGTGAAGATTGTCCGTGAATATTTTGATTTCCAACAACGCTATATGGTGGTTGACTTCGGAACAAACCAATATGAGCATTGGCATCTTTTGTGGACAAAGACTAGGCGGGACAAGTGTGCCATTGGCATGGGGTGGTACAAGTTTTGCTCTGACAAGAACCTTAATAAGGGTGATAAAGTGCACTTCATGTATGAAAGCTCGGAGAAGATATTCCGTGTTGATGTGGAGTCCTCTGCCTAA 2724 0.3994 MSGPIDPISKVCTGREAWRLKVRIVRLWCVPMFGNTSQINSIQMVFMDEHGERIQASVKNTLLYKFKHFLHEGSVFIFTHFTVIPNVGMYMATSHSFRLLFTFKTKYSVAESSIIPLLGLRLVPFDDVLKNDRDSDYLIDVIGVLTSVSSEKDIERDGKLSKMIVIELTSDKGKLECALFGDYVGTLMDFVAVGVNEHPVVIIQFAKVKLFRGKIVLQNVMHATRLLFNPDVAEAVDFRNGIAEHGVIDDVPLLSGTDSFGLSAEDEFMKLYPKKSLKQLHGISELIVNARDDTGDGMFVIFDRDAQYLLKKECGDLLFEEKKYLTGDEVPGLFDGLVGKRLLFKIEVIVDKSVHYDGSFRVKKVCDDECVISMYMLNGAECTPSKSTFKVPFTSIDDSTPSGVGDDGDLSEQCQTEVDVTPFDGGSSTSHSASVSVKRKLENSYVVNGDDSNDIFPKDLQKDMEDVCDVDQYLSLDKLECSIDDNKNNVGVPSLKMVKVESMSPSSTRGRFSGSSVLDGESSRFTFYDVDFSSYRASHLFDEGDDAVDLMLNVEQESLIEHVLFLPSEDEVCLDLGDNVFSCANCGAMTWYEERSDKSNQNSNPQFSICCMKGKIILPYLSRPPELIWNLVNGFDARSVHFIENIRSYNSMFAFTSIGGKIETNFNNGGGPPQFILSGQNFHRIGSLLPVDGERPKFSQMYIYDTSNEVSNRTTVFRLSTLMSWRRCGCEDSHSSRVFEFHEGAKEINQEWYSAGERWNKVFKIRINGPDLLDINYKVGEDGPFVGGVSGNDNVGGDGSGIPNQFQLLWSVQLSEAQASGRQTLYIPVKIVREYFDFQQRYMVVDFGTNQYEHWHLLWTKTRRDKCAIGMGWYKFCSDKNLNKGDKVHFMYESSEKIFRVDVESSA* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01411 907 Gene3D - 805 905 IPR015300 -
Rops10g01411 907 CDD RPA1_DBD_B_like 140 239 - -
Rops10g01411 907 ProSiteProfiles B3 DNA-binding domain profile. 810 907 IPR003340 GO:0003677
Rops10g01411 907 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Rops10g01411 907 SUPERFAMILY DNA-binding pseudobarrel domain 813 896 IPR015300 -
Rops10g01411 907 Gene3D - 115 247 IPR012340 -
Rops10g01411 907 CDD RPA1_DBD_A_like 19 106 - -
Rops10g01411 907 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Rops10g01411 907 SMART B3_2 810 902 IPR003340 GO:0003677
Rops10g01411 907 PANTHER DNA BINDING PROTEIN-LIKE 629 715 - -
Rops10g01411 907 Gene3D - 273 369 IPR012340 -
Rops10g01411 907 Pfam B3 DNA binding domain 814 897 IPR003340 GO:0003677
Rops10g01411 907 Gene3D - 4 108 IPR012340 -
Rops10g01411 907 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01411 Rops-Chr10 27156359 27168690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01411 4 270 Core DNA Replication Machinery Family AT4G19130 20.863 4.45e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops10g01411 B3 1.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01411 - - adu:107465235 370.933