Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01409 ATGGTACCAACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTTTACTGAAGAGAAGGGTGTGGCTAGGCACATTTGAGACAGCAGAGGCTGCAGCAAGGGCTTATGACCAAGCAGCCATTTTGATGAGTGGTCAGAATGCAAAGACCAATTTCCCCACTTCAAAGAATCAAGGTGAAGATGCAGCTGCCACACCTTGTGATGACCCTTTCTTATCTGCCAAGGCTCTTTCAGAGCTATTGAGCACAAAGCTCAGAAAGTACTGCAAAGACCCTTCTCCATCTCTCACTTGTCTGAGGCTAGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAAGGAGCAGGACCACATTCTAACTCTAGTTGGGTCATGAGGGTAGAGCTTGGGAAGAAACAAACAGAGGAGGATAAGTCAACAGGGTCGCCACACACTGGTGGTGTTAATAATGATGGAAATGGGGTAGAAGAAGAGGACAGAGTTGCTATGCAGATGATTGAAGAGCTACTTAATTGGAACTATCCCTGTGGTTCAACTTCAACTAACCCCCAGCAGGAAGAAAAAATGGAACCTTCCATGTCATGGTTCATAAAATAG 627 0.4641 MVPTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGQNAKTNFPTSKNQGEDAAATPCDDPFLSAKALSELLSTKLRKYCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSNSSWVMRVELGKKQTEEDKSTGSPHTGGVNNDGNGVEEEDRVAMQMIEELLNWNYPCGSTSTNPQQEEKMEPSMSWFIK* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01409 208 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Rops10g01409 208 MobiDBLite consensus disorder prediction 142 164 - -
Rops10g01409 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Rops10g01409 208 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Rops10g01409 208 MobiDBLite consensus disorder prediction 187 208 - -
Rops10g01409 208 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Rops10g01409 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01409 Rops-Chr10 27118093 27119194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01409 1 185 AP2-EREBP Transcription Factor Family AT5G25390 62.162 1.23e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g01409 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01409 - - lang:109326202 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01409 10 27118093 27119194 Rops10g01409 10 27118093 27119194 ECH
Rops2g03673 2 68090995 68092232 Rops10g01409 10 27118093 27119194 ECH