Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01408 ATGCATAAAGTACAAAACAAAATGCCTCCTCAGCTGCTACATGGGACGCTTAAGGTAGCCATAGTTGAAGTTGATAGGCTGTACACAGGATGTAACTTGGATTTCTGCCGGCAGGGCACAACGCACAAGGGGAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTGCTGTGTCGGCCTGAGATTGTTGGGACTAGACTCTATGCAACAGTTGATTTAGATAAAGCAAGGGTTGGAAGGACCAGAATGATAGGAAATCAGCCCCACAATCCAAAGTGGAAGGAGACCTTTGAAATTTATTGTGCCCATTACATATCAAACATTGTATTCACTGTCAAAGATGACAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTATGTCCCTGCAGCTCAAGTTCTCAAGGGCCCTATAACTAACAGATGGGTTGAGATATTAGATGAGGAAGATCGTCGTCCTGTACCAGGTGGCTCTAAAATTTGTGTCAGCGTGAAATTCTCCAGTGTTACCGAGGATAGAAATTGTCTGTGGTCTCAGGGAATACATATGCCATTTTTGGGAGTTCCTCGAACTTTTTTCAACCAAAGACAAGGTTGTAGTGTCACTTTGTACCAAGATGCACATATCCCAGATAGCACTCACCCTTGGATTGACATATCTGGAACAAAATACTATGTGCCTGGAAGATGTTGGGTTGACATATACAATGCCATTATGGATGCTAAGTACTTTATTTACATAGCTGGTTGGTCTGTTTACACTAAAATAACCTTGATTAGGGACCCAAGGAAGTCAACAAATAATATCACCCTTGGGGAACTTCTCAAGAAGAAAGCTGATGATGGTGTCAGTGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCAGACTTTAAAAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTACAGAATACTTTAGAGACACAAGAGTGCATTGTGTTTTGTGCCCACGTAACCCGGATGATGGAAGGAGCATAGTTCAAGGTTTACAAATCTCAACCATGTTCACTCATCACCAGAAGACTATAGTAGTTGATGGCCAAGTTGAAGGATCACAGAAGCGAAGGGTGATAAGTTTCATAGGTGGGATTGATCTTTGTGATGGGAGATATGATACAATGGAACATCCTCTGTTTTCAACTTTGAATACACTTCATAATGATGATTTCCATCAGCCAAACTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGCTAGAAGGACCTATTGCATGGGATGTCTTGTACAATTTTGAGCAGAGGTGGGAGAAGCAAGCTAAGAAGCAATTCCCATTCTCACTTGACTACCTTGATCAAATTCTAGTCCATCCATCTCATGCAATGACATCAGAAAAAGATGGGGACACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTAACCTCCCTCAAGCCCCAGATGAAGCTGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGACAGAAGTATTCAGGATGCATACATAAATGCTATTAGGCGTGCAAAAAATTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCATATGGTTGGCAAGCATCTGATATCAAAGTTGAGGATATTGGTGCTTTGCATGTTATACCAAAGGAATTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAGAGGTTTGCAGTGTATGTAGTGATTCCAATGTGGCCAGAAGGTGTACCTGAAAGTGATTCAGTTCAGGCAATATTAGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGAAGCCATAAAGAAGAAGCAAATTGAAGCACACCCTAGGGAGTATTTGACATTTTTTTGCCTTGGTAAAAGGGAAGGTAAGATAGAAGGAGAATACACTCCTCCAGAGGAACCAGAGCCTGACACTGACTATCAAAGAGCACAAAAGTCTAGGAGGTTCATGATCTATGTGCATTCCAAGATGATGATAGTGGATGATGAATACATAATCATTGGTTCAGCCAACATCAACCAAAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGTGCATTCCAACCAAACCATCTAACATCCCCCAGGCCACAAGGTCAGATTTACGGGTTTAGGCGAGCATTATGGTATGAGCATATTGGGGGTACTCATGAGGTGTTTGATGAGCCAGAAAGTAAGGAGTGTGTGACCCTTATGAATCATTTTGGTGAGAGGAACTGGGAACTATACTCTAAGGACACATTTGATGAAAGAAGTGAAGCAAAAGCCCACCTTTTGCGTTACCCTATAGAAGTTACCGAGGATGGAGCTATAACAACACTGCCAGGGCTTCAATTTTTTCCTGACACCACTGCTCCTATTCTTGGCACAAAATCTGATTACCTTCCTCCAATTCTTACCACCTAG 2478 0.4209 MHKVQNKMPPQLLHGTLKVAIVEVDRLYTGCNLDFCRQGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPHNPKWKETFEIYCAHYISNIVFTVKDDNPIGATLIGRAYVPAAQVLKGPITNRWVEILDEEDRRPVPGGSKICVSVKFSSVTEDRNCLWSQGIHMPFLGVPRTFFNQRQGCSVTLYQDAHIPDSTHPWIDISGTKYYVPGRCWVDIYNAIMDAKYFIYIAGWSVYTKITLIRDPRKSTNNITLGELLKKKADDGVSVLMLVWDDRTSVPDFKKDGLMATHDQETTEYFRDTRVHCVLCPRNPDDGRSIVQGLQISTMFTHHQKTIVVDGQVEGSQKRRVISFIGGIDLCDGRYDTMEHPLFSTLNTLHNDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQAKKQFPFSLDYLDQILVHPSHAMTSEKDGDTWNVQLFRSIDGGAASNLPQAPDEAAELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWQASDIKVEDIGALHVIPKELSLKIVSKIEAGERFAVYVVIPMWPEGVPESDSVQAILDWQRRTMEMMYSDIAEAIKKKQIEAHPREYLTFFCLGKREGKIEGEYTPPEEPEPDTDYQRAQKSRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPNHLTSPRPQGQIYGFRRALWYEHIGGTHEVFDEPESKECVTLMNHFGERNWELYSKDTFDERSEAKAHLLRYPIEVTEDGAITTLPGLQFFPDTTAPILGTKSDYLPPILTT* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01408 825 Gene3D Endonuclease Chain A 209 464 - -
Rops10g01408 825 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Rops10g01408 825 Gene3D Endonuclease Chain A 481 714 - -
Rops10g01408 825 FunFam Phospholipase D delta 220 456 - -
Rops10g01408 825 SUPERFAMILY Phospholipase D/nuclease 504 752 - -
Rops10g01408 825 CDD C2_plant_PLD 12 165 - -
Rops10g01408 825 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 343 379 IPR001736 GO:0003824
Rops10g01408 825 SMART pld_4 670 697 IPR001736 GO:0003824
Rops10g01408 825 SMART pld_4 343 379 IPR001736 GO:0003824
Rops10g01408 825 SUPERFAMILY Phospholipase D/nuclease 188 460 - -
Rops10g01408 825 SMART C2_3c 16 141 IPR000008 -
Rops10g01408 825 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
Rops10g01408 825 Pfam Phospholipase D C terminal 742 815 IPR024632 -
Rops10g01408 825 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 63 166 IPR035892 -
Rops10g01408 825 Gene3D C2 domain 50 177 IPR035892 -
Rops10g01408 825 PIRSF PLD_plant 2 825 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops10g01408 825 PANTHER PHOSPHOLIPASE D 12 813 IPR015679 -
Rops10g01408 825 FunFam Phospholipase D 483 716 - -
Rops10g01408 825 Pfam C2 domain 64 143 IPR000008 -
Rops10g01408 825 Pfam Phospholipase D Active site motif 671 697 IPR001736 GO:0003824
Rops10g01408 825 Pfam Phospholipase D Active site motif 343 379 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01408 Rops-Chr10 27106110 27110634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01408 8 825 Phospholipase D Gene Family (Wang group) AT3G15730 64.458 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01408 K01115 - gmx:100794115 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01408 10 27106110 27110634 Rops10g01408 10 27106110 27110634 ECH
Rops10g01407 10 27099768 27103533 Rops10g01408 10 27106110 27110634 ECH