Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01407 ATGTTGCATTTGCTGCACGGGAGGCTCGATGTGATTATATATGAGGTCGATACACTACAAACCCTTTCTGGGTGCAATTTCAATCCCTGCAACAAGGGTACAAGTACAAGCGTGGCAAAGAAATTTCTCTCCCAACTCAAAAGTTGTTTGCTATGCCAATGCCAATGCCAGCCCGAGATTTTTGGGATGGGTCTCTATGCAACGGTTGATTTAGATAAGGCAAGGGTTGGGAGGACTAGAATGTTAAACTATCAACCCTCCAACCCCAAGTGGAATGAGACCTTTCACATATACTGTGCCCATATGATCTCCAATATTATATTCACTGTCAAACAAGATAACCCTATTGGGGCTACTCTAATTGGAAGAGCTTATGTCCCTGTTGAGCAAGTTATGCATGGCAACATAGTTGACACATGGGTCCAGATATTAGATGAGAACCATCGTCCCATAGAAAGTGGCTCCAAAATCCATGTTAAAATGCAATTCTTTGATGTTAAGAATGACATAAACTGGTCTCAAGGAATAAGGAGTCCAAGGTTTCAAGGAGATCCCCACACCTTCTTTGGTCAAAAAACTGGTTGCAAAGTTACTTTGTACCAGGATGCTCATGTTCCTGATGGTTCTGTGCCATGGATCCCATTGTATGGAAACAAAATTTACCACGCTAGTAGATGCTGGGAGGATATTTACAATGCCATTATGAACGCTAAGCATTTTATTTACATAACTGGGTGGTCTGTGGATACTGAAATAACCTTGATTAGGGACCCAAGGAATTCAAGAACAAGTATCACCCTTGGGGAGCTGCTCAAGATGAAAGCCGATGAAGGTGTTAGTGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTTCCAGACCTGAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCAGAATACTTTAGAAACACAAATGTCCATTGTGTTTTGTGCCCCCGTAATCCAGATGATGGAAGAAGTATAATTCAAGGTTTTGAAATCTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGATAGCCAAGTTGAAGGATCACAACAGAAGAGAACAATCTCAAGTTTCGTAGGTGGGATTGATCTGTGTGATGGGAGATATGATACCAAGGAACATCCTTTGTTTTCAACTCTGAATACAGTGCATCATGATGATTTCCATCAACCAAACTTCCCAGGAGCTTCCATCAAGAAAGGAGGTCCAAGAGAGCCATGGCATGACATTCACTGCAAGCTAGAAGGACCTGTTGCATGGGATGTATTGTACAATTTTCAGCAAAGGTGGGAGAAGCAAGTTGGGAAGCGATTCCTACTCCCTTCAAGCATGCTTGATAGTTTTCTAGTCCCTCAATACACCGTAGCAACAACAGATGTAAACGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGCTTCCCCGAAGACCCTGATGAAGCTGCTGAAAAAGGTCTTGTTAGTGGGAAAGATAACATCATTGACAGAAGCATTCAGGATGCATACATAAATGCTATTCGGCGTGCAAAAAACTTCATCTACATTGAAAATCAGTATTTCCTAGGAAGTTCGTATGGTTGGAAAGCACCTGATATTAAAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAACTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAGAGGTTTGCGGTGTATGTTGTGATCCCAATGTGGCCAGAAGGTGTACCTGAGAGCGGTTCAGTTCAAGCAATATTAGACTGGCAAAGGAGGACAATGGAGATGATGTATTCTGACATTGCTGAAGCCATTCAAAGAAAGGGAATAAGAGCCAACCCGAGGGATTACTTGACCTTCTTTTGCCTTGGAAACCGCGAGAGTAAGAAAGATAATGAATATACTCCTCCGGAGAAACCAGAACCTGACAGCGATTATAGTGGAGCACAAAAGTCCAGGCGTTTCATGATCTATGTTCACGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGGGACAGTGAGATTGCAATGGGTGCATTCCAACCACGCCATATAACATCCAACGGGCCACCCAGAGGACAGATATATGGATTCAGACGTGCACTATGGTATGAGCACATTGGAGATCTCAATGATACAAGCATCCTCAACAATCCAGAAAGTGTGAACTGCATCAGGCTTGTGAATCGTCTTGCTGAGACCAACTGGGACATATACTCGAAGGAAACATTTGATGAATTCAGACCATTTCACCACCTCATGAGCTACCCCATAAAAGTAGCCTACAATGGAACCATAACAACCCTTCCAGGATTTGAATTTTTTCCAGACACCAAGGCTCGGATTCTTGGTTCCAAATCAGATTACCTTCCTCCAATTCTCACCACATAG 2475 0.4246 MLHLLHGRLDVIIYEVDTLQTLSGCNFNPCNKGTSTSVAKKFLSQLKSCLLCQCQCQPEIFGMGLYATVDLDKARVGRTRMLNYQPSNPKWNETFHIYCAHMISNIIFTVKQDNPIGATLIGRAYVPVEQVMHGNIVDTWVQILDENHRPIESGSKIHVKMQFFDVKNDINWSQGIRSPRFQGDPHTFFGQKTGCKVTLYQDAHVPDGSVPWIPLYGNKIYHASRCWEDIYNAIMNAKHFIYITGWSVDTEITLIRDPRNSRTSITLGELLKMKADEGVSVLMLVWDDRTSVPDLKKDGLMATHDQETAEYFRNTNVHCVLCPRNPDDGRSIIQGFEISTMFTHHQKTIVVDSQVEGSQQKRTISSFVGGIDLCDGRYDTKEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLYNFQQRWEKQVGKRFLLPSSMLDSFLVPQYTVATTDVNETWNVQLFRSIDGGAASGFPEDPDEAAEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKAPDIKVEDIGALHLIPKELSLKIVSKIEAGERFAVYVVIPMWPEGVPESGSVQAILDWQRRTMEMMYSDIAEAIQRKGIRANPRDYLTFFCLGNRESKKDNEYTPPEKPEPDSDYSGAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHITSNGPPRGQIYGFRRALWYEHIGDLNDTSILNNPESVNCIRLVNRLAETNWDIYSKETFDEFRPFHHLMSYPIKVAYNGTITTLPGFEFFPDTKARILGSKSDYLPPILTT* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01407 824 PIRSF PLD_plant 1 824 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Rops10g01407 824 Gene3D Endonuclease Chain A 484 711 - -
Rops10g01407 824 FunFam Phospholipase D 480 713 - -
Rops10g01407 824 CDD C2_plant_PLD 4 164 - -
Rops10g01407 824 SUPERFAMILY Phospholipase D/nuclease 501 737 - -
Rops10g01407 824 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Rops10g01407 824 SMART C2_3c 46 140 IPR000008 -
Rops10g01407 824 Gene3D C2 domain 56 174 IPR035892 -
Rops10g01407 824 SUPERFAMILY Phospholipase D/nuclease 168 449 - -
Rops10g01407 824 SMART pld_4 340 377 IPR001736 GO:0003824
Rops10g01407 824 SMART pld_4 667 694 IPR001736 GO:0003824
Rops10g01407 824 PANTHER PHOSPHOLIPASE D 3 813 IPR015679 -
Rops10g01407 824 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 62 166 IPR035892 -
Rops10g01407 824 Pfam Phospholipase D C terminal 743 814 IPR024632 -
Rops10g01407 824 Pfam C2 domain 63 142 IPR000008 -
Rops10g01407 824 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 667 694 IPR001736 GO:0003824
Rops10g01407 824 FunFam Phospholipase D delta 217 457 - -
Rops10g01407 824 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 340 377 IPR001736 GO:0003824
Rops10g01407 824 Pfam Phospholipase D Active site motif 340 377 IPR001736 GO:0003824
Rops10g01407 824 Pfam Phospholipase D Active site motif 668 694 IPR001736 GO:0003824
Rops10g01407 824 Gene3D Endonuclease Chain A 215 456 - -
Rops10g01407 824 MobiDBLite consensus disorder prediction 641 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01407 Rops-Chr10 27099768 27103533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01407 3 824 Phospholipase D Gene Family (Wang group) AT3G15730 65.417 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01407 K01115 - gmx:100791688 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01407 10 27099768 27103533 Rops4g02235 4 49032328 49036481 ECH
Rops10g01407 10 27099768 27103533 Rops10g01408 10 27106110 27110634 ECH
Rops10g01407 10 27099768 27103533 Rops10g01407 10 27099768 27103533 ECH