Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01398 ATGGAGCTTCAGTTAGGTCTAGCTCTCCCCACTCACAATCCCATTGAGGGATTGGACCCTATCAACCCTGCTTTAATAAAGTCTAAACAGACAGTGAGTTTAGAGTTATGGAGACCCAGTTGCAGTTCTGAAAGCCAAAAGCATGTCAAAAAGAAGCGTAGCTTCGAAAAGTCCTTTGGACATCTTTTGAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAACGAGGAAGATGACCACAGTGATAAGAAGCAAAGAAACACTCACACATCAAGCAAGAACAACGAAGAAGAAAACCATTTAGTAGGGTGGCCACCAATTAAATCCTGGAGAAAGAAAGAACTTCATCAGCAGAATCCAGCAGAAGGCCAGATTATAAGGAACGATAGGATGCAAGTTAATGAGAACCAAAATAGGGGATCAAACCCTTTATATGTCAAGGTTAACATGGAAGGGGTAGCAGTAGGAAGGAAAATCAATTTGAGGCTTTACAACTCTTATGAGACTCTTACAAATACATTGGTTAGCATGTTTGTTAAATGCCAAAAATTTGAGGAAGCTGAAGCAAGTTATACACTCAAATTTCAAAATGATCAAGGGGATTGGCTGCTTACTGGACATGTTCCATGGGAATCCTTCGTTGCTACGGTGCGGCGTTTGGCGATAGTGAGGAATAGAAATGAAACTACTTGA 696 0.4109 MELQLGLALPTHNPIEGLDPINPALIKSKQTVSLELWRPSCSSESQKHVKKKRSFEKSFGHLLKPLPLLVWSGQPNEEDDHSDKKQRNTHTSSKNNEEENHLVGWPPIKSWRKKELHQQNPAEGQIIRNDRMQVNENQNRGSNPLYVKVNMEGVAVGRKINLRLYNSYETLTNTLVSMFVKCQKFEEAEASYTLKFQNDQGDWLLTGHVPWESFVATVRRLAIVRNRNETT* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01398 231 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 227 IPR003311 GO:0005634|GO:0006355
Rops10g01398 231 MobiDBLite consensus disorder prediction 71 103 - -
Rops10g01398 231 SUPERFAMILY CAD & PB1 domains 138 222 - -
Rops10g01398 231 Gene3D - 139 231 - -
Rops10g01398 231 Pfam AUX/IAA family 2 182 IPR033389 -
Rops10g01398 231 Pfam AUX/IAA family 190 228 IPR033389 -
Rops10g01398 231 MobiDBLite consensus disorder prediction 76 97 - -
Rops10g01398 231 ProSiteProfiles PB1 domain profile. 144 231 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01398 Rops-Chr10 26945237 26946747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01398 147 223 B3 DNA Binding Superfamily AT3G61830 36.364 2.38e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops10g01398 AUX_IAA 5.9e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01398 K14484 - gmx:100802759 333.183