Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01369 ATGGCGTACAACAACCACCACTTGTCCCAAGAGCTTCCACTCCACCATTTCAGAGAGCAGCAGCAGCAGCAACAACAACAACATAACCAGCCTCTAACTGACAACACCTTGCGTCCCATATTGGAAGAACAGCTAGGTGCCTCCCCAGACCTACCCTCCAAACCTGGCTCCGATCCTAACCACCCACTCCAAACCGCGCCCAATTGGTTAAACAACGCCCTTCTTCGCACACACTACCCCAACAACAACAACTCTCCCAACACCAACGTTAACGCTCCAAACAACAACAACAACGGCACCAATTTCCTCAACCTTCACACTGCTGCTTCTGACACCACGACCGGCGCCGCTTCACAATCCTCCGGCCAATGGCTCTCCCGCCCGATCCTTCACCGCAACCACAGCGAAGTCATCGATGACGTTCAGGCCGCCGGCGACTCCATCATCGCCGGTGCTGCCCTGTCCCACGATTCCGCCGATTTGAAGGCTGCCGGCGGCTGCGAGAAGAGCGAGGCGGCGGAGAGTGGACTGATGAACTGGCAGAATGCTAGGTGCAAGGCGGAGATTCTAGCACACCCGCTTTATGAACAGTTGTTGTCTGCACACGTGGCGTGCTTACGGATCGCCACGCCGGTTGACCAGTTGCCGAGGGTCGACGCTCAGCTGGCACAGTCCCAGAATGTGGTCGCTAAGTATTCTGCTTTCGGACAGGGCATGCTTGGTGATGATAATAAGGAACTCGATCACTTCTTGTCGCACTATGTTTTGCTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAGGTCTAACAGGAGTTTCACCAGGAGAGGGTACAGGAGCAACAATGTCAGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCAGATAGCATGGGATTTGGCCCTCTCATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATTAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCCGGTGACACGACCTCTGTACTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGGTTGGTGCATGAAACGGGTTTGCAACTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGAACAGCAATCCTTCAACTTCTACTGTCTTGAAAAGCAAGCGCAAAAGGTGA 1341 0.5078 MAYNNHHLSQELPLHHFREQQQQQQQQHNQPLTDNTLRPILEEQLGASPDLPSKPGSDPNHPLQTAPNWLNNALLRTHYPNNNNSPNTNVNAPNNNNNGTNFLNLHTAASDTTTGAASQSSGQWLSRPILHRNHSEVIDDVQAAGDSIIAGAALSHDSADLKAAGGCEKSEAAESGLMNWQNARCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDAQLAQSQNVVAKYSAFGQGMLGDDNKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQGLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVHETGLQLKQINNWFINQRKRNWNSNPSTSTVLKSKRKR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01369 446 Pfam KNOX2 domain 243 291 IPR005541 GO:0003677|GO:0005634
Rops10g01369 446 Gene3D - 368 440 - -
Rops10g01369 446 SUPERFAMILY Homeodomain-like 371 434 IPR009057 -
Rops10g01369 446 MobiDBLite consensus disorder prediction 46 100 - -
Rops10g01369 446 SMART HOX_1 371 436 IPR001356 GO:0003677
Rops10g01369 446 Pfam KNOX1 domain 186 226 IPR005540 GO:0003677|GO:0005634
Rops10g01369 446 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 433 - -
Rops10g01369 446 SMART KNOX1_2 183 227 IPR005540 GO:0003677|GO:0005634
Rops10g01369 446 CDD homeodomain 372 433 IPR001356 GO:0003677
Rops10g01369 446 ProSiteProfiles ELK domain profile. 349 369 IPR005539 GO:0003677
Rops10g01369 446 ProSiteProfiles 'Homeobox' domain profile. 369 432 IPR001356 GO:0003677
Rops10g01369 446 Pfam Homeobox KN domain 389 428 IPR008422 GO:0003677|GO:0006355
Rops10g01369 446 MobiDBLite consensus disorder prediction 58 100 - -
Rops10g01369 446 FunFam homeobox protein knotted-1-like 3 isoform X1 370 431 - -
Rops10g01369 446 Pfam ELK domain 349 370 IPR005539 GO:0003677
Rops10g01369 446 SMART ELK_2 349 370 IPR005539 GO:0003677
Rops10g01369 446 SMART KNOX2_2 236 292 IPR005541 GO:0003677|GO:0005634
Rops10g01369 446 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01369 Rops-Chr10 26581249 26585911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01369 1 446 Homeobox Transcription Factor Family AT5G25220 63.482 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Rops10g01369 KNOX2 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01369 - - pcin:129303573 671.774