Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01364 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAAGATGCAGCTAGAGCCTATGATGAAGCTGCAAGGCTAATGTGTGGTACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCATCTCAATCATCATCTTCAAAGCTTCTCTCAGCAACTTTGACTGCTAAACTGCATAGGTGCTATATGGCTTCATTGCAAATGACTAGGCCATCGTTGCCAGAGCCTCAGAGAGTAGCTTCTTCATCAAATGTCGTCTCCACAAGCAACAATCCCATGAAAAGTAACGAAACTGATATAATGTTGCCACAGAAGAGACGTCAGGAGGAGCAAGAATCAGAGGGGAATTGGGTTTTCAAGAAGGTTAAAGTGGAAAATACTCAGCAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATAGAGGAGCTGCTTCATTATGGTTCTATTGAGCTTTGCTCTGTCATTCCACCACAGGCTCTTTGA 573 0.4433 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSLPEPQRVASSSNVVSTSNNPMKSNETDIMLPQKRRQEEQESEGNWVFKKVKVENTQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01364 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 132 - -
Rops10g01364 190 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Rops10g01364 190 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Rops10g01364 190 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Rops10g01364 190 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Rops10g01364 190 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Rops10g01364 190 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Rops10g01364 190 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Rops10g01364 190 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Rops10g01364 190 MobiDBLite consensus disorder prediction 101 125 - -
Rops10g01364 190 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01364 Rops-Chr10 26467665 26468631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01364 1 190 AP2-EREBP Transcription Factor Family AT5G25190 67.368 6.60e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops10g01364 AP2 6.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01364 - - gmx:100804510 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01364 10 26467665 26468631 Rops10g01364 10 26467665 26468631 ECH
Rops9g01939 9 35592536 35593670 Rops10g01364 10 26467665 26468631 PCT