Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01361 ATGGAAACACTGAGAAAAGAGCCTTATCTCTGTGATAATAACATGAGTATCCACCCTCCAAGTCCAAGTACACCATTGCAGAATCCACAGGAAAAGGAACAGCAACCTGTTGAGGAAGAAGAAGAAGAAGAAGAAGAAAAGGAGGCAAAGGCAGATACTTTGTTGGATCTGAATGTCCCTGGTGATGATTGTGCATCTGGGTGCAGTCCACAGCTCAATCTCTTCACCTGTTTGGACATGGATTTGTCCAAGACTTCATCAGAAAACAACCCACCTGGTTCTGATGCAGCAGAGCCACGAGTCTTCTCTTGCAACTACTGCCAGAGAAAGTTCTACTGTTCACAAGCACTCGGGGGACACCAAAATGCACACAAAAAAGAGAGGTCAATTGCAAAAAGAACTCAGAGGTTAGGATCACCACACATGATGGCTTCAGCAGCAACTTTTGGGATTCCCTTTCTTCATAATCACCTTCACCGTTTTGCAAGTATGGCTTCTCTACCCCTCCATGGTTCTTTTAGTAATAGACCACTTGGAATTCAGGCTCACTCAATGATTCATAAGCCTTCTCATTTTTCATCCAATGGGTTTGGAAGCACTCATGGACATCATGGTTGGTCAAGACCCCTTATTGATCAACAACCAGGTATAGGGAAGCTAGGGATGGAAACTTTTCATAAAACAGGATCATCATCACGAGGCAGTGTTGGTAGATTCCAAATGGTGAAGACCCAGCTCAATTCAACAGCCAATGAAGAAATCAGTGAACATCTTGGTAGTGAAACTCACTTGAAGACAAATTCAGAAGAGATGAAGCAACTTGACTTATCCCTAAAGCTCTAA 843 0.4318 METLRKEPYLCDNNMSIHPPSPSTPLQNPQEKEQQPVEEEEEEEEEKEAKADTLLDLNVPGDDCASGCSPQLNLFTCLDMDLSKTSSENNPPGSDAAEPRVFSCNYCQRKFYCSQALGGHQNAHKKERSIAKRTQRLGSPHMMASAATFGIPFLHNHLHRFASMASLPLHGSFSNRPLGIQAHSMIHKPSHFSSNGFGSTHGHHGWSRPLIDQQPGIGKLGMETFHKTGSSSRGSVGRFQMVKTQLNSTANEEISEHLGSETHLKTNSEEMKQLDLSLKL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01361 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Rops10g01361 280 MobiDBLite consensus disorder prediction 250 280 - -
Rops10g01361 280 MobiDBLite consensus disorder prediction 35 49 - -
Rops10g01361 280 Coils Coil 37 57 - -
Rops10g01361 280 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 280 IPR044246 GO:0009788
Rops10g01361 280 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Rops10g01361 280 MobiDBLite consensus disorder prediction 1 50 - -
Rops10g01361 280 MobiDBLite consensus disorder prediction 256 280 - -
Rops10g01361 280 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Rops10g01361 280 MobiDBLite consensus disorder prediction 16 32 - -
Rops10g01361 280 Gene3D Classic Zinc Finger 84 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01361 Rops-Chr10 26388923 26389968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01361 39 280 C2H2 Transcription Factor Family AT5G10970 41.667 4.02e-48 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01361 - - gmx:100819663 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01943 9 35708776 35709835 Rops10g01361 10 26388923 26389968 PCT