Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01360 ATGACGGTAGAGAATAGAATGGAAGACCCCGATGACCATTTTCCCATTGGAATGCGTGTTCTTGCCGTCGACGATGACCCCACTTGCCTCGCAGTTCTGGAAACTCTGCTTCGAAGGTGTCAATATCACGTAACCACGACTAAACAAGCAATAACAGCATTGGCGCTGTTGAGAGAAAATAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTCGAGCTTGTTGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAGGGAATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGATTCAAAGGAGAAGAACAAAACCAGCAGGCTAGACAAACCTACTTCTGATGGTACCAATGGACCAGGATCAGCAGGAACAGGAAATTCAGATCCAAATGGAAAGCTGACAAAAAAAAGGAAGGATCAGGATGAAGATGAAGATGAAGATGAGGACCAAGAAAATGGTCATGACACGGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTCTGGTCTGTGGAGCTGCACCGCAAATTTGTTGCCGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAGTTCTTGATTTGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCGAGCCATCTTCAGAAGTATAGGCTTTATCTGAAAAGAATAAGCTGTGTGGCAAACCAACAGGCTAATATGGCAGCAGCATTAGGGGGTGCAGATCCATCCTATTTGAGAATGGGTTCTGCGAGTGGGGTTGGACATTTGCAAACATTGAGTGGTTCTGGGCAGTTTCATAACAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTAGTAGATTGAACACTCCTGCTGGTCTGAATGTGCATGGATTTCCTTCTTCTGGAGTACTTCAGTTGGGTCAATCACAAAATTTAAACAACTGCACCAATGATCAACTTAAGTTCCAGTCAGCCATAATTCCTGTTAATCAGAATGATGTTCAGGGAATGCCAATGACCGTGGGGTTTTACCAATTGCAAAACAATAAGGGTGTTATTTCTGTTCAAAATCCGGCCACTGATTTTGATACCAAAACAACTTTTCCTATCTCAAATAAACTCCCAGATCCAAGATTAAGAATAACCACCTCTAGCTCTCCCACTCCAATTCTGGGTATCTCAAACAATGCCTTGATGTCGGAAGCACACCCTCAAGACACACAACAGGGTGTAGGTTATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAAGTTTGTTTCCCTTTACTGGTTCAAGGTAGCTATAATGATAATTGGTCAAGTGCTGTGCAGCCATCTGGGATCCAGTCAAATTCTTACCCTCCAAATGAATGTTTTAGACAGACAGCTATACCTCCTGCAGATACCATGGCTTCAGTACCCTTGCCAGGGAGTAATCCCAGTGGTCCATCCATCACTTCACTGTGCAGTCAATCCCATGATTCAATGACAGAAATACACTCCTCCCAGGGAGTGCTTTTTACTAATAGACCAGGGCATATAAGCAGTAATGTGCCGCTTCAAGGATGGGATGACCATAATCGGGATGCTACTTACCATTCAAATGTTAATTGTGGATCTATAAACTCTTCGACTCCAGTTAATGGTGCTGTTGTTCCAGTAGGCCATACTCCAACAAACTCAACCTTACATGGAAACTTGGACTTTAATTTTTGTTATCCCTTACAAATGAAGCATGATGTATTCACGGAGTTTACTGAAGAGACCTCATTGAAACATTGTCAGAGGAATATCATGAACCAACAGAAGTCTCAACAAAGTCACTTCTCAAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGAAGAAACTGGAGCAAGATAAGATGAAATTATTGGATGGAGACCTCATTTGTGATAATTACTCTGGTGGGGTATCCATGTGA 2064 0.4278 MTVENRMEDPDDHFPIGMRVLAVDDDPTCLAVLETLLRRCQYHVTTTKQAITALALLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSRLDKPTSDGTNGPGSAGTGNSDPNGKLTKKRKDQDEDEDEDEDQENGHDTEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKVLDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMAAALGGADPSYLRMGSASGVGHLQTLSGSGQFHNNAFRSFSPSGIISRLNTPAGLNVHGFPSSGVLQLGQSQNLNNCTNDQLKFQSAIIPVNQNDVQGMPMTVGFYQLQNNKGVISVQNPATDFDTKTTFPISNKLPDPRLRITTSSSPTPILGISNNALMSEAHPQDTQQGVGYGSSSSSVASQHSEVCFPLLVQGSYNDNWSSAVQPSGIQSNSYPPNECFRQTAIPPADTMASVPLPGSNPSGPSITSLCSQSHDSMTEIHSSQGVLFTNRPGHISSNVPLQGWDDHNRDATYHSNVNCGSINSSTPVNGAVVPVGHTPTNSTLHGNLDFNFCYPLQMKHDVFTEFTEETSLKHCQRNIMNQQKSQQSHFSNNLGSLEDLVSSMKKLEQDKMKLLDGDLICDNYSGGVSM* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01360 687 Gene3D - 17 152 - -
Rops10g01360 687 MobiDBLite consensus disorder prediction 152 172 - -
Rops10g01360 687 CDD REC_typeB_ARR-like 20 134 - -
Rops10g01360 687 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Rops10g01360 687 FunFam Two-component response regulator 202 265 - -
Rops10g01360 687 PIRSF RR_ARR_type-B 1 685 IPR017053 GO:0003677|GO:0003700|GO:0009736
Rops10g01360 687 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 350 IPR045279 GO:0009736
Rops10g01360 687 MobiDBLite consensus disorder prediction 141 207 - -
Rops10g01360 687 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Rops10g01360 687 FunFam Two-component response regulator 18 170 - -
Rops10g01360 687 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Rops10g01360 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Rops10g01360 687 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Rops10g01360 687 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Rops10g01360 687 Gene3D - 202 265 - -
Rops10g01360 687 SMART REC_2 18 130 IPR001789 GO:0000160
Rops10g01360 687 SUPERFAMILY CheY-like 17 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01360 Rops-Chr10 26368334 26373429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01360 1 518 Response Regulator Gene Family AT2G25180 48.972 8.16e-138 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops10g01360 Response_reg 2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01360 - K14491 gmx:100809002 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01360 10 26368334 26373429 Rops10g01360 10 26368334 26373429 ECH
Rops9g01946 9 35773160 35788035 Rops10g01360 10 26368334 26373429 PCT