Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01359 ATGGAAATGATAGGAAATGGAGGCCATGTTGCAAGCCTCCTCCAAGTGGGTGGCCACCACCGAGGTGGTTCACTTGGGAAAGTGATGTCGAGGTTCGGTGAGGCTGTTAAATCTCGTCACTGTCCCCTGGTTTGGGTTCCCGCGAAATTCCGAAGCTCCTTTTTCCAGATCGCCGGAAAATCTTCCACTCCACGGATTTCTATCTTTTTAGCAAAACATGAAAAACCTGGGACAACTCAGGAACAGTTAGAGAGGATAGAAAGAAGTGATGCGAAAGAGAATTCATGTCAAGCCTGTGGAGAAAGTGGAGATCTTCTGAGCTGTGAAACTTGCACATATGCTTACCATTCTAGGTGTTTACTTCCACCACTTAAAGGTCCCCTTCCAGACAACTGGAGGTGTCCTGAATGTGTTAGTCCACTTAATGATATCGATAAGATATTAGATTGTGAAATGCGCCCTACCGTAGCTGCTGACAGTGATGCCACAAAATTGGGGTCAAAGCAAATTTTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATTTGCACTGCACATGGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTTAAGAATCATCCTCGTCTAAAGACCAAAGTGAACAACTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGATTTTGTTGCCATTCGGCCTGACTGGACTGCAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGAAGAGAGGGAATATCTTGTTAAGTGGAAAGAGCTTCCGTATGATGAATGCTATTGGGAATTTGAGTCAGATATTTCTGCTTTTCAGCCAGAAATAGAAAGATTCAATAGATTTCGGTCTAGATCCAGCAAACTTTCTTCCAGTAAGCAAAAAAGCAGTGTTAAGGATGATGCTGAATTGAAGAAGCAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCGAGTTTCTTTCAGGCGGTACACTGCACCCGTATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTAAAGAGGGCGTCTTTCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAGCGTGAATTTGCAACATGGGCACCTCAGATGAACGTCGTTATGTATGTGGGATCTGCCCAAGCTCGTAGTGTTATAAGAGAGTATGAATTTTACTTTCCTAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGATAGTTGGTGAAAGCAAGCAAGACCGGATTAAGTTTGATGTCCTTTTGACATCATATGAAATGATCAACTTTGACACCACATCATTAAAACCTATAAAATGGGAGTGTATGATAGTTGATGAAGGTCATCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTCTTGACTGGGACTCCTCTTCAGAATAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTGGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAGCTTATTCTGCGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGAGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGATGATGCAAAAGAATCATTTAAACAGCTGCTTGAATCATCTGGGAAGTTGCAATTACTGGACAAAATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCTGTATGAAAGGATAGATGGCAAGGTTGGCGGAGCTGAAAGACAAGTACGGATAGATCGTTTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTGGGGATAAACCTCGCAACTGCTGACACAGTTGTTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGTACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGGATGACATCATAAGGTATGGATCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCATGCAAATCCCGTCAAATTCATTATGATGCTGCAGCTATCGATAGATTGCTGGATCGTGACCAAGTTGGACATGAGGAGGCTACTTTGGACGATGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAAGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAGACTGCGAACAGTTCAGAAAGAACATATTATTGGGAGGAGTTGTTAAGAGACAGGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAAGGGAAGCGAAACCGCAAGCTGATGGTTTCTGTTGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGATCTTACTGATGGTGATTCAAATTCCACTGGAACTACTACTGCTAGAAGGCCTTATAAAAAAAAAGCACGTGCGGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAACAATTTAGAGTACTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTCGGTGATTTTGATTGGAAGGAGTTTACATCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTACGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTTCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCATCAGAACATCCTCAAACTCCACTGTTTTCAGATGACATTGTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAAGAGCATGATTTAGTTCTACTGCGTGCTGTGTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAAATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCTTTCTAAATTTACCATTACCAGGACAACTTGGCTCTCAGGCACAAAATGGTACAAATTTGACAAATGCAGAAGTACCCAGCAATCAGTCCAAGGAAAATGGTGGGAGTGACATAGCAGCTGATGGTGCACAAGGTCCTGGTGATGCTAGGAACCAAGCGCAGTTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTAACAAACGAAGAACTTAAAAGTGAACCCAAGGCTGCAAATTTTCCAAGTTATAAATCAGGGGACACTGACACCCGAATGATTGATCAACTGCCACAAGTAGAAACAATAGCTTCAGAAGATATATCGGTTGCTTGTGATAATGATCCAAATCGATTGGAATTAGTTCGACTTTACAATGAGATGTGCAAGGTAGTGGAGAAAAACCCCCTGGATTTAGTTCAAACATCTTTGGCAAGAGAACCTACAGAAGTCAATATCGCTAAGGAATTCCCTCCGCTAGAGACCATTTGTGAAGATATCAACAGAATTCTAATACCCACACAAGAACAGCCTATTGCAGAGATGCCAATATCGAATTCAGATAACAAATCAGAAGCTATATCCCACGGTGAAGTTTTGGGCTCCAAATCGCTGCCTATCCCTCAAGATGACTGCAAACCCGATAATTCAGCAGAAAACGAGAGTACAGGTATGGTAATAGAATCTGAACCTAAAACAGAAAGTTGCTCAAGCCCGGTAAAGGAGAAGAACGAAACACCAAGTCTTCCAGAGAAAAAGGAAAGTAATACAGAAATGGATGAAACAAAGAGTGACGCTGAGTTGAATGAAAACACACAGAAATCTGATGCTGGGGTCATTGTATTGGACGCTTAA 4461 0.4109 MEMIGNGGHVASLLQVGGHHRGGSLGKVMSRFGEAVKSRHCPLVWVPAKFRSSFFQIAGKSSTPRISIFLAKHEKPGTTQEQLERIERSDAKENSCQACGESGDLLSCETCTYAYHSRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTVAADSDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKNHPRLKTKVNNFHRQMASVNTSDEDFVAIRPDWTAVDRILACRGDDEEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKLSSSKQKSSVKDDAELKKQQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKEGVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQIVGESKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWLYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEACKSRQIHYDAAAIDRLLDRDQVGHEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETANSSERTYYWEELLRDRYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTTARRPYKKKARADSTEPLPLMEGEGKQFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASEHPQTPLFSDDIVLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFLNLPLPGQLGSQAQNGTNLTNAEVPSNQSKENGGSDIAADGAQGPGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEELKSEPKAANFPSYKSGDTDTRMIDQLPQVETIASEDISVACDNDPNRLELVRLYNEMCKVVEKNPLDLVQTSLAREPTEVNIAKEFPPLETICEDINRILIPTQEQPIAEMPISNSDNKSEAISHGEVLGSKSLPIPQDDCKPDNSAENESTGMVIESEPKTESCSSPVKEKNETPSLPEKKESNTEMDETKSDAELNENTQKSDAGVIVLDA* 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01359 1486 CDD SF2_C_SNF 649 775 - -
Rops10g01359 1486 Gene3D - 571 795 IPR027417 -
Rops10g01359 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 824 IPR027417 -
Rops10g01359 1486 ProSiteProfiles Chromo and chromo shadow domain profile. 142 224 IPR000953 -
Rops10g01359 1486 Pfam Chromo (CHRromatin Organisation MOdifier) domain 235 283 IPR023780 -
Rops10g01359 1486 Pfam Chromo (CHRromatin Organisation MOdifier) domain 158 200 IPR023780 -
Rops10g01359 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 561 IPR027417 -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 947 964 - -
Rops10g01359 1486 SMART ultradead3 324 537 IPR014001 -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1178 1215 - -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 947 994 - -
Rops10g01359 1486 Pfam Helicase conserved C-terminal domain 651 764 IPR001650 -
Rops10g01359 1486 SMART PHD_3 95 138 IPR001965 -
Rops10g01359 1486 SMART helicmild6 680 764 IPR001650 -
Rops10g01359 1486 SUPERFAMILY Chromo domain-like 219 284 IPR016197 -
Rops10g01359 1486 CDD CD1_tandem 140 214 - -
Rops10g01359 1486 Gene3D - 232 283 - -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1437 1472 - -
Rops10g01359 1486 ProSiteProfiles Zinc finger PHD-type profile. 93 140 IPR019787 -
Rops10g01359 1486 ProSiteProfiles Chromo and chromo shadow domain profile. 234 296 IPR000953 -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1270 1292 - -
Rops10g01359 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 138 IPR013083 -
Rops10g01359 1486 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 526 IPR014001 -
Rops10g01359 1486 Gene3D - 139 231 - -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1384 1486 - -
Rops10g01359 1486 Pfam SNF2-related domain 348 628 IPR000330 GO:0005524|GO:0140658
Rops10g01359 1486 SMART DUF1086_2 952 1111 IPR009462 GO:0003677|GO:0006338
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1420 1436 - -
Rops10g01359 1486 SMART chromo_7 141 210 IPR000953 -
Rops10g01359 1486 SMART chromo_7 232 286 IPR000953 -
Rops10g01359 1486 SMART DUF1087_2 881 947 IPR009463 -
Rops10g01359 1486 Pfam CHD subfamily II, SANT-like domain 975 1108 IPR009462 GO:0003677|GO:0006338
Rops10g01359 1486 ProSitePatterns Zinc finger PHD-type signature. 96 137 IPR019786 -
Rops10g01359 1486 Gene3D - 1078 1256 - -
Rops10g01359 1486 Coils Coil 880 900 - -
Rops10g01359 1486 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 654 815 IPR001650 -
Rops10g01359 1486 Pfam PHD-finger 96 138 IPR019787 -
Rops10g01359 1486 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 87 1464 - -
Rops10g01359 1486 MobiDBLite consensus disorder prediction 1178 1200 - -
Rops10g01359 1486 Gene3D - 320 570 IPR038718 -
Rops10g01359 1486 Pfam CHD subfamily II, DUF1087 886 944 IPR009463 -
Rops10g01359 1486 CDD CD2_tandem 232 283 - -
Rops10g01359 1486 SUPERFAMILY Chromo domain-like 108 219 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01359 Rops-Chr10 26338622 26366222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01359 350 825 RAD5 or RAD16-like Gene Family AT1G02670 22.662 4.58e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g01359 SNF2_N 1.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01359 K11643 - gmx:100790230 2529.21