Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01354 ATGGCACAGTGTCACCGGAACAACGTCGAATCAATCGTTCTCGACCACCGCCACTCAGCCAAGAATCCAACCTCTGGCGGCCACTTCCGCCTCTCTGTCTCCTCATTCCGCCGCATCATCTTCGACGCCGTAAGCTGCGGCGGCAGCTCTCGGCACCGGAATCACCACCGCCACGACGATTTCAGCTCCGCCGAATCGACGGCGAGCCTGACCTCGGGTAGCTGCGGAGAGAAGCGGCAAGTGGAAGAAGAGGAGAGGTCGGAGAAGCTATCGGATCTTCTGAAAATATCGGAGACGGAGGCGAAGAAGGAAGAGGCATTGTCGGAGTTGAAGCAAGTGGTGAAGGAGTTGCGTGGAGAGGACTTGAAGAAGCGGCAAATGGCGGCGGTTAGAGTGAGGTTACTGGCGAAAGAAGACTCAGAAGCCAGAGGAACACTCGCAATGCTTGGAGCAATTTCTCCACTCGTTGGAATGCTTGATTTGGAAGAAGATCTTCATTCTCAGATCGCTTCTCTCTATGCATTACTCAATCTCGCGATCGCAAACGATGCAAATAAAGCGGCAATTGTAAAAGTTGGTGCTGTTCACAAGATGCTAAAGCTAATTGAATCGAGGGATGTTCCAGATTCATCTGTATCTGAAGCAACTGTTGCGAATTTTCTTGGTTTGAGTGCTTTGGATTCGAACAAACCAATAATTGGATCCTCTGGTGCAATACCATTCCTAGTTAGAATCCTTCAAAATTTAGATAACAATAAAAGTGGCAGCTCCCAAGTTAAGCAAGATGCTCTACGAGCTTTGTACAATCTTTCAATCTTTCAGACCAACATTTCATTAGTTCTGGAAACTGATTTGGTCTCTTTTCTGATAAATGCTATTGGGGACATGGAAGTGAGTGAGAGAATCCTCTCAATCCTTAGCAATTTGGTTTCAACCCCAGAGGGTAGAAAAGCTATCAGTGGTGTGAGGGATGCAATCCCAATTTTGGTGGATGTATTGAATTGGACAGATTCTCCACAATGCCAAGAGAAGGCATCATACATTTTGATGATTATGGCACACAAAGCCTATGGTGATAGACATGCCATGATTGAGGCAGGGATTATGTCTTCATTGCTTGAGTTGACTCTTCTGGGTACCGCATTGGCACAGAAAAGGGCCTCGAGGATATTAGAATGCTTGAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAACTATGGTGGAAACTTAGGTTCAACTGTTTCTGCACCTATTTGTGCCTCTTCATCATCTTTTACTGAGCCAGATGGAGGTGGTAAAGAGTATTTGGTGGAAGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAGAACAACATGATTAAAATGGTGAAGAGGGCAAACTTGCGTCAGGATTTTGTTCCATCTCAGCATTTTGCTTCACTCACTTCAAGTTCCACTTCAAAGAGCCTGCCATTTTGA 1488 0.461 MAQCHRNNVESIVLDHRHSAKNPTSGGHFRLSVSSFRRIIFDAVSCGGSSRHRNHHRHDDFSSAESTASLTSGSCGEKRQVEEEERSEKLSDLLKISETEAKKEEALSELKQVVKELRGEDLKKRQMAAVRVRLLAKEDSEARGTLAMLGAISPLVGMLDLEEDLHSQIASLYALLNLAIANDANKAAIVKVGAVHKMLKLIESRDVPDSSVSEATVANFLGLSALDSNKPIIGSSGAIPFLVRILQNLDNNKSGSSQVKQDALRALYNLSIFQTNISLVLETDLVSFLINAIGDMEVSERILSILSNLVSTPEGRKAISGVRDAIPILVDVLNWTDSPQCQEKASYILMIMAHKAYGDRHAMIEAGIMSSLLELTLLGTALAQKRASRILECLRVDKGKQVSGNYGGNLGSTVSAPICASSSSFTEPDGGGKEYLVEEEDMMSEEKKAVKQLVQQSLQNNMIKMVKRANLRQDFVPSQHFASLTSSSTSKSLPF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01354 495 Pfam Armadillo/beta-catenin-like repeat 229 271 IPR000225 GO:0005515
Rops10g01354 495 Coils Coil 436 456 - -
Rops10g01354 495 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 32 495 - -
Rops10g01354 495 SMART arm_5 139 180 IPR000225 GO:0005515
Rops10g01354 495 SMART arm_5 273 311 IPR000225 GO:0005515
Rops10g01354 495 SMART arm_5 312 354 IPR000225 GO:0005515
Rops10g01354 495 SMART arm_5 226 272 IPR000225 GO:0005515
Rops10g01354 495 SMART arm_5 182 225 IPR000225 GO:0005515
Rops10g01354 495 Gene3D - 69 251 IPR011989 -
Rops10g01354 495 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 271 IPR000225 GO:0005515
Rops10g01354 495 Coils Coil 96 120 - -
Rops10g01354 495 MobiDBLite consensus disorder prediction 47 90 - -
Rops10g01354 495 SUPERFAMILY ARM repeat 109 394 IPR016024 -
Rops10g01354 495 Gene3D - 252 402 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01354 Rops-Chr10 26279603 26281447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01354 97 407 U-box Gene Family AT2G23140 32.692 1.30e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01354 - - gmx:100796229 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01949 9 35903620 35906714 Rops10g01354 10 26279603 26281447 PCT