Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01348 ATGGAACCAACGTGCGTGGATACTTCTCTCAACCTTAACGTTATTCCCTCTCGGGGCATGGACGTTGCGGCTGAGATTTTGATTGAAGAGTTGCAGCGTCTAAGTAGTGAGAATAAGAGGTTAACCGAGATGTTGAACCACATGTGCGAGAACTATCTTGCTTTGCAAAAGCATTTGAGTCAATTCACAAATGTTGAAAAAGTAGAGACACCATCGCTGAAGAGGAAGGCAGAGAGTGAGAATTGTATCAGCACCACTACTGATCAGGAGGAGGAGACTTTCAAAAGGCCCAAACATAACACTGAGCCAAAGGTTTCCAAGGTTCTTGTACGAACGGAAGCATCTAATACCAGCTTATATGTTAGCGATGGATATCACTGGAGAAAATACGGTCAGAAAGTCACCAGAGACAACCCCTCTCCTAGGGCTTACTTCAAGTGCTCCCATGCTCCAAGCTGCCCAGTGAAGAAAAAGGTGCAAAAAAGTGTAGAAGATCCAACTGTTTTGGTGACAACTTATGAAGGAGAGCACAACCATCCACATAACCAAGCTGAAATATCACTCAGTTCAAGCCAGAGTGAAACCCCTACAGGTTCAGTTCCTGCTTCATCACCCTCACCCAGGAATTGGAGTTCAGATCCATCTGTAACGTTTGACTTGGTACACTCAAGATTGGTTGACAATGCCCAAAAGTCATCTGTTCAGCAGTTTTTAGTTCAACAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCACAGCAGCACTTGCTACTGCTATTTCAGGAAGAATTCTAGAAAAACGGTGA 807 0.4374 MEPTCVDTSLNLNVIPSRGMDVAAEILIEELQRLSSENKRLTEMLNHMCENYLALQKHLSQFTNVEKVETPSLKRKAESENCISTTTDQEEETFKRPKHNTEPKVSKVLVRTEASNTSLYVSDGYHWRKYGQKVTRDNPSPRAYFKCSHAPSCPVKKKVQKSVEDPTVLVTTYEGEHNHPHNQAEISLSSSQSETPTGSVPASSPSPRNWSSDPSVTFDLVHSRLVDNAQKSSVQQFLVQQMATSLTRDPNFTAALATAISGRILEKR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01348 268 MobiDBLite consensus disorder prediction 76 100 - -
Rops10g01348 268 MobiDBLite consensus disorder prediction 182 212 - -
Rops10g01348 268 Coils Coil 24 51 - -
Rops10g01348 268 SMART WRKY_cls 121 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g01348 268 SUPERFAMILY WRKY DNA-binding domain 118 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g01348 268 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 264 IPR044810 GO:0003700
Rops10g01348 268 Gene3D WRKY domain 104 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops10g01348 268 MobiDBLite consensus disorder prediction 175 212 - -
Rops10g01348 268 Pfam WRKY DNA -binding domain 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops10g01348 268 ProSiteProfiles WRKY domain profile. 116 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01348 Rops-Chr10 26190475 26191850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01348 6 267 WRKY Transcription Factor Family AT1G80840 46.207 1.85e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops10g01348 WRKY 4.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01348 - - gmx:100127373 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g01974 9 36478085 36480900 Rops10g01348 10 26190475 26191850 PCT