Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01339 ATGACGTGGTTGTCGTTGTTGTACTTACAATTGGTTCCTTCATATGTTGCTTGTCCTTCAATCACTCCATATTCTATGTCAGTTTTACCTGATCCTGTGAAAGAAAGAAACAAAAATATAAGAATGGGAATATATCTCAGCACTCCCAAAACTGAAAAGTTTTCCGAAGATGGTGAAAATGACCGTCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTTTCTTCACCAACAGGTACTCAAAAATGAAGCATATTCAGTTGGAGATATTGGAACCTCTCTTCAGAAAGCCTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAATTGTCAATCTTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAATGATGGTAATAACCGAGTTGAAGATTGGGCTTTTGAGGAGGGACCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTCATTAGAAACAACCAACTTTTTGTTGCGAATGCTGGTGATTCACGTTGTGTAATATCACGGAAGGGTCAGGCATACAATTTGTCTAGAGACCATAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGGAGAGTTAATGGCAGTTTGAATCTTGCAAGAGCTATTGGTGACACGGAATTTAAACAGAATAAATTTCTTCCTGCTGAAAAACAAATTGTAACTGCCAATCCAGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATTGTGCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAATTGGTAGACTTTGTTCATGAACAATTGCGCTCGGAAACGAGACTTTCTGTAGTGTGTGAAAGGGTACTTGACCGGTGTTTGGCACCATCAACTGCTACTGGGGAGGGATGTGATAATATGACCATGATCTTGGTGCAGTTCAAAAAACCTGCTCAGTCCAGTGCATCATCAGCAGACGCGCAATCCTCATCAAATGGGCAAGCTGAATCTGAACCAAAACTGGAAAGTAGTGAAACTTAG 1209 0.4103 MTWLSLLYLQLVPSYVACPSITPYSMSVLPDPVKERNKNIRMGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKNEAYSVGDIGTSLQKAFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSNDGNNRVEDWAFEEGPHSDFAGPTSGSTACVAVIRNNQLFVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGRVNGSLNLARAIGDTEFKQNKFLPAEKQIVTANPDINTVELCDEDEFIVLACDGIWDCMSSQQLVDFVHEQLRSETRLSVVCERVLDRCLAPSTATGEGCDNMTMILVQFKKPAQSSASSADAQSSSNGQAESEPKLESSET* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01339 402 MobiDBLite consensus disorder prediction 377 402 - -
Rops10g01339 402 ProSiteProfiles PPM-type phosphatase domain profile. 64 370 IPR001932 -
Rops10g01339 402 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Rops10g01339 402 SMART PP2C_4 54 368 IPR001932 -
Rops10g01339 402 SMART PP2C_SIG_2 69 370 IPR001932 -
Rops10g01339 402 Gene3D - 41 371 IPR036457 -
Rops10g01339 402 CDD PP2Cc 64 370 IPR001932 -
Rops10g01339 402 SUPERFAMILY PP2C-like 44 372 IPR036457 -
Rops10g01339 402 MobiDBLite consensus disorder prediction 377 395 - -
Rops10g01339 402 PANTHER PROTEIN PHOSPHATASE 2C 51 369 IPR015655 GO:0004722|GO:0006470
Rops10g01339 402 Pfam Protein phosphatase 2C 197 355 IPR001932 -
Rops10g01339 402 Pfam Protein phosphatase 2C 64 145 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01339 Rops-Chr10 26115595 26124571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01339 42 384 PP2C-type Phosphatase Gene Family AT2G25070 78.134 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01339 K17499 - tcc:18587697 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01339 10 26115595 26124571 Rops10g01339 10 26115595 26124571 ECH
Rops9g01964 9 36262032 36269272 Rops10g01339 10 26115595 26124571 PCT