Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01330 ATGGCCTCCAAGCTCTGCGACTCCTGCAAGTCCGCCACCGCCACTCTCTATTGCCGCCCTGACTCCGCCTTCCTTTGCGGAGCCTGCGACTCCAAGGTCCACGCCGCCAACAAGCTCGCCTCCCGTCACCCTCGCGTCTCCCTCTGCGAGGTCTGCGAGCAAGCCCCCGCCGCCGTCACCTGCAAGGCAGACGCCGCCTCCCTCTGTCTCACCTGCGACCGCGACATACACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCCTCCCTGTCACTCCCGTCTTCGAACCCATCCACTCCGTCAAGTCCTCCTCACCAACTAACTTCCTCGACCAGCAGCGCTTCTTCTCTGATGCAGATGCCGAGGCTGCTTCGTGGTTGCTCCCTAACCCCAAGGCAGATCTCAACTCCTCTCCCTACTTGTTCTCCGAAACCGAACCCATCTCCTTCGTAGATCTGGATTATGGCCCTCTCGATCCCAAAGCAGAACACAAAAGCGACGGTGTAGTTCCAGTACAGACCAACTTCGATGGTTACAACCACAACTTCCAGTCGCAGTCACAGTCACAGATGAGTCATAGTGTATCTTCGTCGTCGATGGAGGTTGGTGTTGTGCCGGATGGGAGCACCGTATCGGAGGTATCGAACTGCAGCTACGGCAAGGCTGGGGCGGCGGATAGGGAAGCTAGGGTATTAAGGTACAGGGAGAAGAGGAAGAATAGAAGGTTCGAGAAGACCATTCGTTATGCTTCCAGGAAAGCTTATGCAGAAACCAGACCCAGAATCAAAGGCAGGTTTGCCAAACGCTCCGAATCTCTACCTGGATACGGCGTCGTTCCCACCTGTTGA 849 0.576 MASKLCDSCKSATATLYCRPDSAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAAVTCKADAASLCLTCDRDIHSANPLASRHERLPVTPVFEPIHSVKSSSPTNFLDQQRFFSDADAEAASWLLPNPKADLNSSPYLFSETEPISFVDLDYGPLDPKAEHKSDGVVPVQTNFDGYNHNFQSQSQSQMSHSVSSSSMEVGVVPDGSTVSEVSNCSYGKAGAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSESLPGYGVVPTC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01330 282 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Rops10g01330 282 ProSiteProfiles CCT domain profile. 227 269 IPR010402 GO:0005515
Rops10g01330 282 CDD Bbox1_BBX-like 5 48 - -
Rops10g01330 282 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Rops10g01330 282 Pfam CCT motif 227 269 IPR010402 GO:0005515
Rops10g01330 282 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Rops10g01330 282 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Rops10g01330 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 271 IPR045281 GO:0009909
Rops10g01330 282 CDD Bbox1_BBX-like 48 91 - -
Rops10g01330 282 SMART bboxneu5 1 48 IPR000315 GO:0008270
Rops10g01330 282 SMART bboxneu5 49 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01330 Rops-Chr10 26016869 26018009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01330 1 281 C2C2-CO-like Transcription Factor Family AT5G24930 53.846 7.50e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops10g01330 zf-B_box 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01330 - - gmx:100794431 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01330 10 26016869 26018009 Rops10g01330 10 26016869 26018009 ECH