Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01315 ATGGTGAAGAATCATCCTACTAAATTTGTTTACTCTTTGATCATCGTTACTTGGTCTCTAAGTTTCTTGATGGGCATGGCTCAAACAAAGGAGACAGTGGCAGTGAAAGTGGGAGCTGTGCTTGATCTTACTGGAACGGTAGGGAAGATGGGGTTGAGCTGCATCAACATGTCACTCTCAGACTTCTATATCTCTCATTCTCATTACAACACCAGGCTTCAATTCAGCGTCAGGGACTCTCACAGGGACGTCGTTACTGCCACTTCTCAAGCTCTAGATCTCATAAAAAATGAGGAAGTGCAAGCTATCATGGGGCCAACAACAACACCTGAGGCAACCTTTGTGATCCGTCTCGGAGACAAAGCACACGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTGCTCTTACATCACTTCAGAGTCCTTATTTTTTCCAAATCGCACAAACTGATTCAGCTCAATTAAAAGCCATCACTGCAGTTATCCAAGCTTTTGGGTGGAAACAAGTGGTGCCCATTTACGTAGATGATAGTTTTGGTGAAGGAATCATTCCATGCTTAACCAATGTTCTACAACAAGCCTATGTTCGAGTTCCCTATCTCAGTGCCATTTCTGATTCAGCTACAGATGAAGCCATCACTAAAGAGCTCAATAAGTTGATGAATATGCCAACTAGAGTCTTTGTTGTGCACATGTCACCACGTCTTGGCTCTCGCCTCTTCACCATTGCAAGGGAGATTGGGATGATGGTTCAAGGCTATGTTTGGATGGTAACCGATGGTATGGCTAATTTATTCAACTCTTTAGACCCCTCGGTCATGGAATTGATGGAAGGAGTATTGGGTGTTAGGCCTTATATTCCAAGAACCAAACAGCTTGATGATTTTAAAGCTCTGTGGAAAAGAAAATTCCTAAGCGACAATCCAACACTTGTTGACACAAATTTGAACGTTTTTGGAATATGGGCTTATGATGCTACCACAGCATTAGCAATGGCTGTTGAGAAGGTTGGAACCACCAACTTTGGCTACCTTGTGAGCAACACTTCAAACAACCTGTCTGATCTAGAAAGGTTTGGCATTGCACAAAATGGTGAGAAGTTGCGTGAAGCTCTATCAGACACTAGATTTATAGGCCTCAGTGGTGAGTTCAATGTTCATGATGGGAAGTTACAAGCATCAGCATTTGAGATAATTAATGTGATTGGTAATGGGGAAAGGAGGGTAGGATTTTGGACACCCCAGAAGGGGCTAGCCAGAAATTTGGATATAAAAGGCCCAAGCATATATTCTACTTCTAAGAACAATCTTGGACCAATTCTATGGCCAGGAGATACACACTATTTTCCAAAGGGATGGGAATTTCCCACAAATGGGAGCAAGTTAAAGGTAGGAGTTCCAGTGAAAGATGGAGATGGTTATACTGAATTTGTGAAAATAACACATGACCCTAGTACCAATTCAACATTGGTCACTGGCTTTTCCATTGATGTCTTCAAAGCCATGCTGGAAGTGTTGCCGTATGCCTTAACTTATGAATTTATTCCATTTGCAAAGCCCAATGGTGAGATGGCAGGAACATATGATGAGTTGGTCAGCCAAGTTTATTATGGGAAATTTGATGTTGTGGTGGGGGATACAACGATCATTGCAAACAGGACCAACTACGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGATTGTTGCAGTAAAAGACAACAGGAAGAAGAATGCTTGGGCCTTTTTGAAGCCACTTACATGGGATCTTTGGGTAACAACAGCTTGTTCGTTCGTATTCATTGGATTTGTTGTGTGGATCCTTGAACACCGAATAAACAACAATTTCAGGGGGCCTCCCTCTCATCAAATTGGCACAAGTTTATGGTTTTCCTTCTCAATCATGGTGTTTGCCCATCGGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTCGTGATTGTATGGGTTTTTGTGGTTCTAATTCTGGTACAAAGTTACACCGCGAGCCTTACTTCCCTCTTAACAGTTGAACAACTACGCCCAGCAATTACAGATGTGCATCAACTCATAAAGTATAGGATGAATGTTGGCTACCTAAAAGGCTCTTTTGTTTATGGAATATTGAAGAGCTTGGGTTTCCAAGATTACCAGCTCAAAACTTATGAATCCCCTGAAGAATGCAATGAGCTTTTCACAAAAGGAAGTGCAAATGGCGGCATTGCTGCTGCGTTTGATGAAGTTCCCTATGTGAAGCACTTTCTAGGAACTTACTGCTCCAAATATGTCATGGTTGAACCCAGATTCAAAACTGGAGGCTTTGGCTATGTGTTCCCAAAAGGTTCCCCTCTTGTATCTGACATTTCAAGGGTAATCCTCAATGTGACTCAGGGAGACAAAATGAGAACAATTGAGGATACTTGGTTCAATGAAAGTAGTTGTCTTGAGTTTAATACAAAAATTTCCTCTAATAACAATCTTGGCCTTGAAAGCTTAAAGGTCCTGCTCTAG 2517 0.4195 MVKNHPTKFVYSLIIVTWSLSFLMGMAQTKETVAVKVGAVLDLTGTVGKMGLSCINMSLSDFYISHSHYNTRLQFSVRDSHRDVVTATSQALDLIKNEEVQAIMGPTTTPEATFVIRLGDKAHVPIVTFSATSPALTSLQSPYFFQIAQTDSAQLKAITAVIQAFGWKQVVPIYVDDSFGEGIIPCLTNVLQQAYVRVPYLSAISDSATDEAITKELNKLMNMPTRVFVVHMSPRLGSRLFTIAREIGMMVQGYVWMVTDGMANLFNSLDPSVMELMEGVLGVRPYIPRTKQLDDFKALWKRKFLSDNPTLVDTNLNVFGIWAYDATTALAMAVEKVGTTNFGYLVSNTSNNLSDLERFGIAQNGEKLREALSDTRFIGLSGEFNVHDGKLQASAFEIINVIGNGERRVGFWTPQKGLARNLDIKGPSIYSTSKNNLGPILWPGDTHYFPKGWEFPTNGSKLKVGVPVKDGDGYTEFVKITHDPSTNSTLVTGFSIDVFKAMLEVLPYALTYEFIPFAKPNGEMAGTYDELVSQVYYGKFDVVVGDTTIIANRTNYVDFTMPYTESGVTMIVAVKDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWILEHRINNNFRGPPSHQIGTSLWFSFSIMVFAHREKVVSNLGRFVVIVWVFVVLILVQSYTASLTSLLTVEQLRPAITDVHQLIKYRMNVGYLKGSFVYGILKSLGFQDYQLKTYESPEECNELFTKGSANGGIAAAFDEVPYVKHFLGTYCSKYVMVEPRFKTGGFGYVFPKGSPLVSDISRVILNVTQGDKMRTIEDTWFNESSCLEFNTKISSNNNLGLESLKVLL* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01315 838 FunFam Glutamate receptor 582 712 - -
Rops10g01315 838 FunFam Glutamate receptor 461 582 - -
Rops10g01315 838 PIRSF IGluLR_plant 5 838 IPR017103 -
Rops10g01315 838 Gene3D - 582 714 - -
Rops10g01315 838 Pfam Receptor family ligand binding region 55 403 IPR001828 -
Rops10g01315 838 SUPERFAMILY Periplasmic binding protein-like II 439 813 - -
Rops10g01315 838 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 837 IPR015683 -
Rops10g01315 838 SUPERFAMILY Periplasmic binding protein-like I 35 444 IPR028082 -
Rops10g01315 838 Gene3D - 152 313 - -
Rops10g01315 838 CDD PBP1_GABAb_receptor_plant 36 422 IPR044440 -
Rops10g01315 838 CDD GluR_Plant 461 811 - -
Rops10g01315 838 SMART GluR_14 463 813 IPR001320 GO:0015276|GO:0016020
Rops10g01315 838 Pfam Bacterial extracellular solute-binding proteins, family 3 491 812 IPR001638 -
Rops10g01315 838 Gene3D - 314 462 - -
Rops10g01315 838 Gene3D - 463 581 - -
Rops10g01315 838 FunFam Glutamate receptor 2.7 719 818 - -
Rops10g01315 838 Pfam Ligand-gated ion channel 813 836 IPR001320 GO:0015276|GO:0016020
Rops10g01315 838 Gene3D - 760 818 - -
Rops10g01315 838 FunFam Glutamate receptor 361 460 - -
Rops10g01315 838 FunFam Glutamate receptor 150 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01315 Rops-Chr10 25814585 25819304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01315 9 821 Ion Channels AT2G29120 52.574 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01315 K05387 - cave:132185791 1044.26