Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01314 ATGGGCATGGCTCAAACAAAGGAGACAGTGGCAGTGAAAGTGGGAGCTGTGCTTGATCTTACTGGAACGGTTGGGAAGATGGGGTTGAGCTGCATCTACATGTCACTCTCAGACTTCTATCTCTCTCATTCTCATTACAACACCAGGCTTCAATTCAGCGTCAGGGACTCTCACAGGGACGTCGTTACTGCCACTTCTCAAGCTCTAGATCTCATAAAAAATGAGGAAGTGCAAGCTATCATGGGGCCAACAACAACACCTGAGGCAACCTTTGTGATCCGTCTCGGAGACAAAGCACACGTGCCCATTGTAACCTTTTCAGCAACAAGCCCTGCTCTTACATCACTTCAGAGTCCTTATTTTTTCCAAATCGCACAAACTGATTCAGCTCAATTAAAAGCCATCACTGCAGTTATCCAAGCTTTTGGGTGGAAACAAGTGGTGCCCATTTACGTAGATGATAGTTTTGGTGAAGGAATCATTCCATGCTTAACCAATGTTCTACAACAAGCCTATGTTCGAGTTCCCTATCTCAGTGCCATTTCTGATTCAGCTACAGATGAAGCCATCACTAAAGAGCTCAATAAGTTGATGAATATGCCAACTAGAGTCTTTGTTGTGCACATGTCACCACGTCTTGGCTCTCGCCTCTTCACCATTGCAAGGGAGATTGGGATGATGGTTCAAGGCTATGTTTGGATGGTAACCGATGGTATGGCTAATTTATTCAACTCTTTAGACCCCTCGGTCATGGAATTGATGGAAGGAGTATTGGGTGTTAGGCCTTATATTCCAAGAACCAAACAGCTTGATGATTTTAAAGCTCGGTGGAAAAGAAAATTCCTAAGCGACAATCCAACACTTGTTGACACAAATTTGAACGTTTTTGGAATATGGGCTTATGATGCTACCACAGCATTGGCAATGGCTGTTGAGAAGGTTGGAACCACCAACTTTGGCTACCTTGTGAGCAACACTTCAAACAACCTGTCTGATCTAGAAAGGTTTGGCATTGCACAAAATGGTGAGAAGTTGCGTGAAGCTCTATCAAACACTAGATTCACAGGCCTCAGTGGTGAGTTCAATATTCAAGATGGGCAGTTACAAGCATCAGCATTTGAGATAATTAATGTGATTGGTAACGGGGAAAGGAGGATAGGATTTTGGACACCCCAGAAGGGGCTAGCCAGAAATTTGGATACAAAAGGTCCAAGCATACATTCTACTTCTAAGAACAATCTTGGACCAATTATATGGCCAGGGGATACACACTCTTTTCCAAAGGGATGGGAATTTCCCACAAATGGGAGCAAGTTGAGGGTAGGAGTTCCAGTGAAAGATGGAGATGGTTATACTGAATTTGTGAAAATAACACATGACTCTAGTACCAATTCAACATTGGTCACTGGCTTTTGCATTGATGTCTTCAAAGCCATGCTGGAAGTGTTGCCGTATGCCTTAACTTACGATTTTATTCCATTTGCAAAGCCCAATGGTGAGATGGCAGGAACATATGATGAGTTGGTCAGCCAAGTTTATTATGGGAAATTTGATGCTGTGGTGGGGGATACAACGATCATTGCAAACAGGACCAACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTCCAGTAGAAGACAACAGGAAGAAGAATGCTTGGGCCTTTTTGAAGCCACTTACATGGGATCTTTGGGTAACAACAGCTTGTTCGTTCGTATTCATTGGATTTGTTGTGTGGATCCTTGAACACCGAATAAACAACAATTTCAGGGGGCCTCCCTCTCATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAATCATGGTGTCTGCCCATCGGGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTGATTGTATGGGTTTTTGTGGGTCTAATTCTGGTACAAAGTTACACCGCGAGCCTTTCTTCCCTCTTAACAGTTGAACAACTACGCCCAGCTATTACAGATGTGCACCAACTCATTAAGTATAGGATGAATGTTGGCTACCTAAAAGGCTCTTTTGTTTATGGAATATTGAAGAGCTTGGGTTTCCAAGATTACCAGCTCAAAACTTATGAATCCCCTGAAGAATGCAATGAGCTTTTCACAAAAGGAAGTGTAAATGGCGGCATTGCTGCTGCGTTTGATGAAGTTCCCTACGTGAAGCACTTTCTTGGAACTTACTGCTCCAAATATGTCATGGTTGAACCCAGATTCAAAACTGGAGGCTTTGGCTATGTGTTCCCAAAAGGTTCCCCTCTTGTATCTGACATTTCAAGGGCAATCCTCAATGTGACTCAGGGAGACAAAATGAGAACAATTGAGGATACTTGGTTCAATGAAAGTAGTTGTCTTGAGTTTAATACAAAAATTTCCTCTAATAACAGTCTTGGCCTTGAAAGCTTCTGGGGTCTGTTTCTAGTTGCAGGGATTGCTTCCCTATTAGCACTCCTTATCTTTGCAATTAAATTCTTATATCAGCATAGACATATATGGTTACACTATGATTCAAGCACTTCAATATGGAAACGTATTGGAATGTTGGTAAGGATATTCGACCAAAGAGACTTGGAGTGTCACACATTCAAGAAAAGTGAAACGAAAAATAGAAGTGAAAGTAGTAGTACTCAACATGGCTTAGGTGCAATTGAGGCCTCCCCAAGTTCACACTGCCCATCTAGTCCCTCTAGCCAAACCGAATCAAACATTTCCATTTATGTAGATTTCAGTCCAGACTATAGAGATACTAAACCATATGGTTAA 2790 0.4226 MGMAQTKETVAVKVGAVLDLTGTVGKMGLSCIYMSLSDFYLSHSHYNTRLQFSVRDSHRDVVTATSQALDLIKNEEVQAIMGPTTTPEATFVIRLGDKAHVPIVTFSATSPALTSLQSPYFFQIAQTDSAQLKAITAVIQAFGWKQVVPIYVDDSFGEGIIPCLTNVLQQAYVRVPYLSAISDSATDEAITKELNKLMNMPTRVFVVHMSPRLGSRLFTIAREIGMMVQGYVWMVTDGMANLFNSLDPSVMELMEGVLGVRPYIPRTKQLDDFKARWKRKFLSDNPTLVDTNLNVFGIWAYDATTALAMAVEKVGTTNFGYLVSNTSNNLSDLERFGIAQNGEKLREALSNTRFTGLSGEFNIQDGQLQASAFEIINVIGNGERRIGFWTPQKGLARNLDTKGPSIHSTSKNNLGPIIWPGDTHSFPKGWEFPTNGSKLRVGVPVKDGDGYTEFVKITHDSSTNSTLVTGFCIDVFKAMLEVLPYALTYDFIPFAKPNGEMAGTYDELVSQVYYGKFDAVVGDTTIIANRTNYVDFTMPYTESGVTMVVPVEDNRKKNAWAFLKPLTWDLWVTTACSFVFIGFVVWILEHRINNNFRGPPSHQIGTSLWFSFSIMVSAHREKVVSNLGRFVVIVWVFVGLILVQSYTASLSSLLTVEQLRPAITDVHQLIKYRMNVGYLKGSFVYGILKSLGFQDYQLKTYESPEECNELFTKGSVNGGIAAAFDEVPYVKHFLGTYCSKYVMVEPRFKTGGFGYVFPKGSPLVSDISRAILNVTQGDKMRTIEDTWFNESSCLEFNTKISSNNSLGLESFWGLFLVAGIASLLALLIFAIKFLYQHRHIWLHYDSSTSIWKRIGMLVRIFDQRDLECHTFKKSETKNRSESSSTQHGLGAIEASPSSHCPSSPSSQTESNISIYVDFSPDYRDTKPYG* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01314 929 PIRSF IGluLR_plant 1 921 IPR017103 -
Rops10g01314 929 Gene3D - 736 795 - -
Rops10g01314 929 SMART GluR_14 440 790 IPR001320 GO:0015276|GO:0016020
Rops10g01314 929 Gene3D - 440 558 - -
Rops10g01314 929 FunFam Glutamate receptor 302 437 - -
Rops10g01314 929 Pfam Ligand-gated ion channel 790 821 IPR001320 GO:0015276|GO:0016020
Rops10g01314 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 874 IPR015683 -
Rops10g01314 929 Gene3D - 129 290 - -
Rops10g01314 929 CDD PBP1_GABAb_receptor_plant 13 399 IPR044440 -
Rops10g01314 929 SUPERFAMILY Periplasmic binding protein-like I 12 421 IPR028082 -
Rops10g01314 929 FunFam Glutamate receptor 438 559 - -
Rops10g01314 929 Gene3D - 291 439 - -
Rops10g01314 929 Gene3D - 559 691 - -
Rops10g01314 929 FunFam Glutamate receptor 559 689 - -
Rops10g01314 929 MobiDBLite consensus disorder prediction 881 915 - -
Rops10g01314 929 FunFam Glutamate receptor 127 282 - -
Rops10g01314 929 Pfam Receptor family ligand binding region 32 380 IPR001828 -
Rops10g01314 929 Pfam Bacterial extracellular solute-binding proteins, family 3 468 789 IPR001638 -
Rops10g01314 929 MobiDBLite consensus disorder prediction 876 929 - -
Rops10g01314 929 SUPERFAMILY Periplasmic binding protein-like II 417 790 - -
Rops10g01314 929 CDD GluR_Plant 438 788 - -
Rops10g01314 929 FunFam Glutamate receptor 2.7 696 795 - -
Rops10g01314 929 SUPERFAMILY Voltage-gated potassium channels 567 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01314 Rops-Chr10 25794483 25815257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01314 1 909 Ion Channels AT2G29120 52.851 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01314 K05387 - cave:132185171 1120.53