Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01313 ATGAGCATGGCGCAAAGAAATGCAACAGTCCCAGTGAAAGTTGGAATTATTGTTGATCTTGGAGGAGTATTTGGGAAGATGGGGTTGAGCTGCATCAACATGGCCATCTCTGACTTCTATCAAACTCATTCTCATTACCATACCAGGCTTTTCTTCAACGTCAGGGACTCCCGTGAGGATGTTGTTACTGCTGCTGCTGAAGCTCTAGATCTAATAAAAAATGAGAAAGTGCAAGCCATAATAGGGCCAATAACATCAATGCAGACCAACTTTGTGATCAGACTTGGAGAGAAAGCTCATGTACCTATTATAACATTTTCAGCCACAGGTGCTTCTCTAACATCTCTAAGGAGCCAATATTCATTTCGTTTATCACAAAATGATTCGGCTCAAGCAAATGCCATAAGTTCAATTGTTCAAGCTTTTGGGTGGAAAGCAGCAGTGCCCATTTACATAGACAATGATCATGGGAAAGGAATCATACCCTTTCTCATCAATGCTTTACAACAAGACTTCATCCACATTCCATATCTTAGTGCCATCTCTCCTTCAGCCACTGATGAAGACATTAGGGGAGAGCTTTACAAGTTGATGACCATGCAAACTAGAGTGTTTGTTGTTCATATGTCTTCTAATCTCGGATCTCGGCTCTTTACCATAGCAAAAGAGATAGAGATGATGAACGAAGGGTATGTATGGATCATAACTGATGGTATGGCTAATGTATTATCCTCTTTAGATTCCCAACTCAAAGAATCAATGCAGGGAGTATTGGGTGTAAAAGCTTATATTCCAAAAACAAAACAGTTTGATGATTTTAAAGTTCGTTGGAGAAGAGAATTCATTCAAGAATATCCAACCCTTGTTGATACAAACTTAAATGCTTATGGAGTATGGGCCTATGATGCAACCACGGCATTAGCAATGGCTGTGGAGAAGGTTGGCAGCACCAACTTCACAAGGAATGGTTCAAGAAACATGAGTGATGATGATCTTGAAAGTCTTGAAGTTTCTCAAACTGGTGAAAAGCTACGTGGGGTCTTATCAAACACTAGATTTAAAGGCCTCAGTGGAGATATCAGTGTGATTGAAGGACAATTGCAAGCATCCACTTTTGAGATAATCAATGTGAATGGCAATGGGGAAAGGAGGGTAGGCTTTTGGACATCACTGAATGGATTAATGAGGGATCTGACTTTGACAAACACAAACACATATTCTGTTTCAAAGAACAACTTGGGACCCATTATATGGCCTGGGGACACTTCCTCTATTCCGAAAGGTTGGGATAATCCAACAAATGCAAACAAGTTAAAGATAGGAGTCCCGGTGAGAAAAGGTTTCACTGAATTTGTGAAGGTTACACGTGATCCCAGCACAAATACATCAAAGGTAACTGGGTTCAGCATCGATGTTTTCAAGGCTGCACTGGAAATGTTGCCTTATGCCCTTCCATATGAACTCATCCCATTTGCAAAGCCCAATGGGGAGAGTGCAGGATCATACAATGAATTGATCAGCCAAGTTTATTTTGGGAACTTTGATGCTGTAGTAGGAGATCCCACAATTACTGCAAACAGATCCAATTATGTGGACTTCACCATGCCATACACTGAATCTGGTGTAACTATGATAGTTCCAATGAAAGTAAACAAGCAGAAGAATGCATGGGTTTTCTTGGAGCCTTTGACATGGAATCTTTGGGCAGCTACTGCTTTTTCCTTCATATTCGTTAGTTTTGTGGTTTGGATCCTTGAACACAGGATAAACGAAGACTTCAGAGGGCCTCCCTTGCATCAAATTGGCACCAGCCTATGGTTCTCTTTCTCATTGATGGTCTTTGCCCATAGGGAGAAGGTAGTTAACAACCTGGCTAGATTTGTTGTGATGATATGGGTTTTTGTAATACTGATTTTGGTTCAAAGCTATACAGCAAGTTTGACTTCGTTCTTAACAGTTGAGAAGCTTAGTCCAACTCTCACAGATGTTAATCAGCTTATGAAGAATAGGCTGAACATTGGATACCCTAAAGGTTCTTTTGTGTATGGGATCTTGAAGAACATGGGATTTCAAGATTTCCAGCTTATACCTTATACTTCCACAGAAGAGTGTGATGAACTCTTCACAAAAGGAAGTGGAAATGGTGGCATTGCTGCTGCTTTTGATGAAACCCCATATTTGAGGATGATTCTTGAAACTTATTGCTCCAAGTATACCATGGTTGGACCCATGTTTAAAACCAGTGGCTTTGGCTATGTTTTTCCCAGAGGTTCACCTTTGGTAGCTGACATTTCAAGGGCAATCCTTAATGTGACACAAGGTGATAAAATGAAAATGATTGAGAACGCATGGTTCAGGAAAAGCAATTGTCCAGAGACTGATTCTTCTTCAGATAATCTTGGCCTTAATTGCTTCTGGGGCCTTTTTCTTATAGCAGCTATTGCTTCACTTTCATCTCTCTTCATCTTTGCCGTTACATTCCTACATCAGCATAGATATATCTGCTTCCAATCTAATTCTGACACCTCCGTATGGAAACGAATTGGCGTCATGCTGAGAATATTTGACCAAATAGACCCTAGTTCCCACGCTTCCAGAAAGAGAGAGGTGCAAGGTGAAAGTGTAAATAGCAGCACTCAGCATGGCTTAGCAGTAGTTGAGTCCTCTACAACCCCACCAAGTCCCTCCCCGTCAGCTCAAACGGAATCGAACTTTTCCTTTTATGCAGATCATGGTGATGTTAATCCATATGGTCATGAACCTGATGACATGGAGATAACCTTACAAAATGTTCCATCTGCAAGAACTACGACTCTGGAACTGAAAGTAGTCCCTGCACACAACTGA 2847 0.4099 MSMAQRNATVPVKVGIIVDLGGVFGKMGLSCINMAISDFYQTHSHYHTRLFFNVRDSREDVVTAAAEALDLIKNEKVQAIIGPITSMQTNFVIRLGEKAHVPIITFSATGASLTSLRSQYSFRLSQNDSAQANAISSIVQAFGWKAAVPIYIDNDHGKGIIPFLINALQQDFIHIPYLSAISPSATDEDIRGELYKLMTMQTRVFVVHMSSNLGSRLFTIAKEIEMMNEGYVWIITDGMANVLSSLDSQLKESMQGVLGVKAYIPKTKQFDDFKVRWRREFIQEYPTLVDTNLNAYGVWAYDATTALAMAVEKVGSTNFTRNGSRNMSDDDLESLEVSQTGEKLRGVLSNTRFKGLSGDISVIEGQLQASTFEIINVNGNGERRVGFWTSLNGLMRDLTLTNTNTYSVSKNNLGPIIWPGDTSSIPKGWDNPTNANKLKIGVPVRKGFTEFVKVTRDPSTNTSKVTGFSIDVFKAALEMLPYALPYELIPFAKPNGESAGSYNELISQVYFGNFDAVVGDPTITANRSNYVDFTMPYTESGVTMIVPMKVNKQKNAWVFLEPLTWNLWAATAFSFIFVSFVVWILEHRINEDFRGPPLHQIGTSLWFSFSLMVFAHREKVVNNLARFVVMIWVFVILILVQSYTASLTSFLTVEKLSPTLTDVNQLMKNRLNIGYPKGSFVYGILKNMGFQDFQLIPYTSTEECDELFTKGSGNGGIAAAFDETPYLRMILETYCSKYTMVGPMFKTSGFGYVFPRGSPLVADISRAILNVTQGDKMKMIENAWFRKSNCPETDSSSDNLGLNCFWGLFLIAAIASLSSLFIFAVTFLHQHRYICFQSNSDTSVWKRIGVMLRIFDQIDPSSHASRKREVQGESVNSSTQHGLAVVESSTTPPSPSPSAQTESNFSFYADHGDVNPYGHEPDDMEITLQNVPSARTTTLELKVVPAHN* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01313 948 Gene3D - 325 441 - -
Rops10g01313 948 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 860 IPR015683 -
Rops10g01313 948 Gene3D - 445 555 - -
Rops10g01313 948 FunFam Glutamate receptor 437 556 - -
Rops10g01313 948 FunFam Glutamate receptor 2.7 693 792 - -
Rops10g01313 948 FunFam Glutamate receptor 337 436 - -
Rops10g01313 948 Pfam Ligand-gated ion channel 787 815 IPR001320 GO:0015276|GO:0016020
Rops10g01313 948 FunFam Glutamate receptor 131 291 - -
Rops10g01313 948 SMART GluR_14 437 787 IPR001320 GO:0015276|GO:0016020
Rops10g01313 948 SUPERFAMILY Periplasmic binding protein-like I 12 429 IPR028082 -
Rops10g01313 948 Pfam Receptor family ligand binding region 31 380 IPR001828 -
Rops10g01313 948 MobiDBLite consensus disorder prediction 871 904 - -
Rops10g01313 948 Pfam Bacterial extracellular solute-binding proteins, family 3 462 786 IPR001638 -
Rops10g01313 948 PIRSF IGluLR_plant 1 913 IPR017103 -
Rops10g01313 948 Gene3D - 129 294 - -
Rops10g01313 948 CDD GluR_Plant 436 785 - -
Rops10g01313 948 Gene3D - 556 677 - -
Rops10g01313 948 MobiDBLite consensus disorder prediction 863 904 - -
Rops10g01313 948 FunFam Glutamate receptor 556 686 - -
Rops10g01313 948 SUPERFAMILY Periplasmic binding protein-like II 416 787 - -
Rops10g01313 948 Gene3D - 732 792 - -
Rops10g01313 948 CDD PBP1_GABAb_receptor_plant 13 398 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01313 Rops-Chr10 25781530 25787211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01313 6 902 Ion Channels AT2G29120 50.664 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01313 K05387 - tcc:18587654 1099.73