Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01312 ATGGTCTGCGAGATGGAGAGTGACTGTATTGAGGATATGGACATTGAAGCCCTCCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAATTCAACATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGCAGATTTCAAGCGTCTCATGGAGCTCACAAATCTTTCAGAGAAAGGGTCTTCTCAGTTGGCATATCTTATGAAGCACTGGGAGTATAAGCAGGCTAATGTTGCACGTCTTCTAAGGGAAGAACTTGACAATCTAAGCAAACAAAGGCAGGATGTCGAGCTAAGGAAGTTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGGGGGTGATAAACGCCCAGTTTCTATATTGGATGATATTTATGATATATGGCAAGATGTACCATGCAGGAAAAGTGATGTTGTAGTTCAAAACAAGAGAATTGAGATTGATGCTGAGTATGATACTGTTATATACTGGAAACAGCGAGCCATGCATTTAGAAAAGCTGCTGGAGGCAAGTATCCAGAGAGAACAGATACTTGAAGAAAAGTTACAAGAAAGTATAAAGAACATTGAAAGGCAGTCGTCACCTGTGGAAGAACTCTCTCAGATCCTGAAGAGGGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTCATCTATAATCATTTTCCAAGTTTACATGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCATGGGATCTGGTGTTAGAGAATCTCAGGATTTTAAGAGAGAAGTTTTAGAAAAAGGATTACCAGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAAACATTCTTGATATATGTAGAACCCGTGTTTAGCAAGGCAGGGGAGACAATTGGAATAAACTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAATCAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCACCACTGTCTGGTGTTGTTGGCGTGGCTGAACTTCTTTCCACCACAAAACTTGATCGGGAGCAAAGACAGCTTTTGGATGTCATGCTATCTTCAGGATATCTGATTCTTCAACTTATAAATGATATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAGTATTAACCTTAGAAGGACATGTGGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATTCGGCAAATTCTCACAAATTTGATAAGCAATGCCATCAAGTTCACCCATGAAGGCAAAGTTGGGATAAACCTTGACGTCGTGTCAGAGTCAACTTTTGCAGAAGCTGAAGGCATCCAAAAGATGACTCCAGACCATTCAGCTATTTCAGTGAATGGAGTGAAAAAAGAAAAATATCTTTCAACACCTCAAAATGGCAGTGATAGAAATCTCCTTGATGGTCAAAAACATGATGACCATCCCAGCCAAAATCATGCATTTAATGATGAATGTAGATCTCCAGTTAAAAGTGAATGCTCAATGAACGGTGACACTGAGGAGCAACCTCATTCAACTGAAGCAACAGTGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAATGCTATACCTACTTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCATGCTCGAAAATATGGTGGCACAGGACTAGGACTAGCAATATGCAAACAACTGGTTGGGTTGATGGGGGGTCGTCTAACAGTGTCTAGCAAAGAACACCATGGTTCTACCTTCACGTTCATACTTCCATACAAGGTCTCAACCGTTTGTGATAATTCTGATGACCCAGATGAGCTGTCAGATGTGGAGAATAACGATGCTGTGTCTGATGATTCAACAGAGGGTTTCTTCCAATTCCAACCACGCACCTTGGGCTCTCTTTTCTCCTCTAATGGATCTAGCAGGACTCAGAAGTTATTGCCACAAAAAACTGGGTACACAAGTTCACATAAATTCAATGGGTTTTCAGAGAGTTCATACTCATTCCTCTTAACAGCTGATGATGCATCTTCAGTGGTTGATGCTTCAGAGATGTCTGAATCAGCCAGTTCATCTGGTCACAGCCCAGAAACAAAGAACAGATGTTTAGTTAGCAGAGACAAACAGCATCAATATAGGGCTCATACTTGGCCCCAGAACGGTAGTGCAGATTCTGCTCAACCAACTGTGACAAATAGAGAAATTGCTGTGGCAACAAAGTCGAGTGACCCCCAACAAACATGTCAGGATCAAGGGACGGCAAACATGACTGCACAATGTGTTACTAGCAGCTGTACATCAGAAGTAACCAAATCCACATCAAAGCCTAGGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGTCATGGCATAGATGTTGTAAATAATGGACTGGAAGCAGTACATGCAGTTCAGCGCCGTACTTATGACCTGGTTCTGATGGATGTCTGCATGCCAGTCATGAATGGTCTTCAAGCAACAAAACTAATTCGATCTTTTGAGGAAACAGGCAACTGGGATGTTGGAATCGAGCAAAGTCTACCACATCCAGATTATGAATGTTCTGTACCATCTACAAGGAGGATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTGAACAATACCTAAGGTGA 3012 0.411 MVCEMESDCIEDMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFKRLMELTNLSEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRQDVELRKLEILEEHRFEEERYGGDKRPVSILDDIYDIWQDVPCRKSDVVVQNKRIEIDAEYDTVIYWKQRAMHLEKLLEASIQREQILEEKLQESIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFMGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVGVAELLSTTKLDREQRQLLDVMLSSGYLILQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKVLTLEGHVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLDVVSESTFAEAEGIQKMTPDHSAISVNGVKKEKYLSTPQNGSDRNLLDGQKHDDHPSQNHAFNDECRSPVKSECSMNGDTEEQPHSTEATVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVGLMGGRLTVSSKEHHGSTFTFILPYKVSTVCDNSDDPDELSDVENNDAVSDDSTEGFFQFQPRTLGSLFSSNGSSRTQKLLPQKTGYTSSHKFNGFSESSYSFLLTADDASSVVDASEMSESASSSGHSPETKNRCLVSRDKQHQYRAHTWPQNGSADSAQPTVTNREIAVATKSSDPQQTCQDQGTANMTAQCVTSSCTSEVTKSTSKPRILLVEDNKINVMVTQSMMKQLGHGIDVVNNGLEAVHAVQRRTYDLVLMDVCMPVMNGLQATKLIRSFEETGNWDVGIEQSLPHPDYECSVPSTRRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYLR* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01312 1003 SMART REC_2 862 998 IPR001789 GO:0000160
Rops10g01312 1003 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Rops10g01312 1003 Coils Coil 92 119 - -
Rops10g01312 1003 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Rops10g01312 1003 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Rops10g01312 1003 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Rops10g01312 1003 Gene3D - 437 683 IPR036890 -
Rops10g01312 1003 MobiDBLite consensus disorder prediction 557 572 - -
Rops10g01312 1003 MobiDBLite consensus disorder prediction 687 701 - -
Rops10g01312 1003 FunFam Putative histidine kinase 5 359 436 - -
Rops10g01312 1003 CDD REC_hyHK_CKI1_RcsC-like 864 998 - -
Rops10g01312 1003 SMART HKATPase_4 482 679 IPR003594 -
Rops10g01312 1003 Pfam Response regulator receiver domain 864 931 IPR001789 GO:0000160
Rops10g01312 1003 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Rops10g01312 1003 Gene3D - 855 1003 - -
Rops10g01312 1003 FunFam Histidine kinase 5 213 348 - -
Rops10g01312 1003 Gene3D PAS domain 212 348 - -
Rops10g01312 1003 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Rops10g01312 1003 SUPERFAMILY CheY-like 860 1003 IPR011006 -
Rops10g01312 1003 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Rops10g01312 1003 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 461 676 IPR036890 -
Rops10g01312 1003 ProSiteProfiles Histidine kinase domain profile. 378 679 IPR005467 -
Rops10g01312 1003 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Rops10g01312 1003 FunFam Probable histidine kinase 1 569 682 - -
Rops10g01312 1003 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1002 - -
Rops10g01312 1003 MobiDBLite consensus disorder prediction 686 705 - -
Rops10g01312 1003 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 677 IPR003594 -
Rops10g01312 1003 Coils Coil 188 208 - -
Rops10g01312 1003 FunFam Histidine kinase 5 856 1003 - -
Rops10g01312 1003 CDD HATPase_EvgS-ArcB-TorS-like 487 676 - -
Rops10g01312 1003 Gene3D - 358 436 - -
Rops10g01312 1003 MobiDBLite consensus disorder prediction 545 596 - -
Rops10g01312 1003 ProSiteProfiles Response regulatory domain profile. 863 1002 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01312 Rops-Chr10 25764356 25771239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01312 1 532 Histidine Kinase Gene Family AT5G10720 69.361 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g01312 HATPase_c 2.9e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01312 - - gmx:100819520 1639.01