Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01303 ATGGACATAGTGAAGCATGCCATGGGTGGTTCTGGTGCTGATGCTGATTCATCAACAACCACATATAATCACACCCCATCTTCTGCTAATGATAACAAATTGTACAAAGGAGTGAGAAAGAGAAAGTGGGGCAAATGGGTTTCTGAAATTAGGCTTCCCAATAGCCGTGAACGCATATGGTTGGGGTCTTATGATTCTCCTGAGAAGGCTGCTAGAGCCTTTGATGCTGCCCTTTACTGTCTACGTGGTCGCCATGCCAGTTTCAATTTCCCTGACACACCTTTCAACTTGAACATCAATGTGGCTGCAGCTGGTGAACAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTTGCTAATGAGGAACCACAACTGCTTGTTGATAATAATCAAGAACCCTCTTCTCAACCTCAACGTGGTGCTAATTCATTCGGATCCAAATCTAAGTCCCCCAGCATAACAGAGAGTACTTATACCACTGCCTCCTCATCTTCTACTATGTTTGAGTATGATGGGACAGTGCAAGTGGACCATGGGGACATGAACACAATGGATTGGACATTTTTGAACGGGTTAGATGACAATAGTGAGGGTCTTGTTGGCTCCAATTATAGCCTCTATTCTCAGCTGCACTCGGGTGAGTTATTGTATTCCACTCCACCACCACCCCCTTTTGAGGATAATGGTGACGAATTTGAAGGTGATGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTAG 759 0.4414 MDIVKHAMGGSGADADSSTTTYNHTPSSANDNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHASFNFPDTPFNLNINVAAAGEQSLTPQEIQEVAAKFANEEPQLLVDNNQEPSSQPQRGANSFGSKSKSPSITESTYTTASSSSTMFEYDGTVQVDHGDMNTMDWTFLNGLDDNSEGLVGSNYSLYSQLHSGELLYSTPPPPPFEDNGDEFEGDDPFSHQSFLWNWNF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01303 252 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Rops10g01303 252 MobiDBLite consensus disorder prediction 13 29 - -
Rops10g01303 252 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Rops10g01303 252 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Rops10g01303 252 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Rops10g01303 252 MobiDBLite consensus disorder prediction 1 29 - -
Rops10g01303 252 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Rops10g01303 252 MobiDBLite consensus disorder prediction 131 161 - -
Rops10g01303 252 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Rops10g01303 252 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Rops10g01303 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 174 - -
Rops10g01303 252 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Rops10g01303 252 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01303 Rops-Chr10 25633213 25633971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01303 35 220 AP2-EREBP Transcription Factor Family AT1G74930 46.875 4.56e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops10g01303 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01303 - - gmx:100817386 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01303 10 25633213 25633971 Rops10g01303 10 25633213 25633971 ECH