Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01300 ATGGCGGATGTTATGGTCATGAAAGAGATCGAAGACACAGCTTCGCGTCTCGGAGTCGATCTCTCCACTCTCGATCTCGACGCCATTCGTCTCCCTCCAGGCGATAATTGCGGCATCATAAGTGATGATGAGGATACTTATCCAGAAGATCCTCTTGAGTTCGATTCTGGATTCGGTAATATTATTGTGGTGGATAACCTCCCTGTTGTTCCACGAGAGAAGTTTGAGAAGCTCGAAGGGGTTGTTCGTAAAATTTATAGCCAGATTGGTGTTATTAAGGAAGATGGGCTTTGGATGCCTGTTGATCCCGAAACTGATAAGACTTTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAACTTGCTAAGGAGAAGACTCATGGATACAAATTGGACCGTGCACACATATTTGCTGTAAACATGTTTGATGACATGGACAAGTTTATGAGAGTTCCAAATGAGTGGGCTCCTCCTGAAACCAACCCGTATGTTGCAGGGGAAAATCTTCAACATTGGCTAACTGATGCGAAGGCGCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTCTTGTGGAACGATGCAAGACATTTGAAGCCTGATCCTGTTTATAAGCGTACATTTTGGACTGAGAGTTTTGTGCAATGGTCCCCTCTGGGAACATATTTGGCAACAGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCTGCAACCTTCAACCGACTCATGCGTTATGCTCATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAAAAATATTTGGTTACTTATAGCAGCCATGAGCCTAGCAATCCTCGAGATGCTAATAGGGTTGTAATAAATATATTTGATGTGAGGACCGGTAAAGTGATGAGGGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGCACTGGGGGTGTAACTGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGCCGAGAGGATAAGTACTTTGCAAGGATGGGAAAAAATATACTCTCTGTATATGAGACAGAGACCTTTTCTCTCGTTGACAAAAAATCCTTAAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCCATCATTTCACTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCTAGGGTGAGTCTGGTTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTATTTAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTTGACCGATATACGAAAACTAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAGAATAAGAATGATAAGATCATTGCCTTTGCTTGGGAGCCAAAGGGCCATAGGTTTGTAGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATTTACTCTATGCGGACTGCTCAGAACACTGGCCGGGTTTCGAAGCTCACCACTCTTAAAGGCAAGCAAGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAATGTTGACGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTGTATCGGATACTGAAGGATCACTTCTTCCAGTTCTTGTGGCGACCAAGGCCGCCATCTTTCTTGACACCTGAGAAAGAGGAAGAGATCGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCAGAAGATCAAGATGTTTCGTTGCTACTGAGTGAGCAGGAGCGTGAGAAGCGTCGAATGCTAAAAGAAGAGTGGGAGAAGTGGGTCAACGAATGGAAGAGGATGCATGAAGAAGACCATTTGGATAGGCAAATGCTTAGGGACGGAGAGGCCAGTGATGAAGAAGAGGAATACGAAGCAAAGGATATCGAAGTGGAAGAAATAATTGATGTAACTGAGGAGGTTCTTCACTTCGAGTATGGTCAAGAGTGA 2160 0.4366 MADVMVMKEIEDTASRLGVDLSTLDLDAIRLPPGDNCGIISDDEDTYPEDPLEFDSGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVNMFDDMDKFMRVPNEWAPPETNPYVAGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAATFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGREDKYFARMGKNILSVYETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWEKWVNEWKRMHEEDHLDRQMLRDGEASDEEEEYEAKDIEVEEIIDVTEEVLHFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01300 719 SUPERFAMILY RNA-binding domain, RBD 49 140 IPR035979 GO:0003676
Rops10g01300 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Rops10g01300 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Rops10g01300 719 CDD RRM_eIF3B 59 143 IPR034363 -
Rops10g01300 719 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Rops10g01300 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Rops10g01300 719 Gene3D - 179 384 IPR015943 GO:0005515
Rops10g01300 719 Gene3D - 390 628 IPR015943 GO:0005515
Rops10g01300 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 54 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops10g01300 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Rops10g01300 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 41 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops10g01300 719 MobiDBLite consensus disorder prediction 679 698 - -
Rops10g01300 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Rops10g01300 719 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Rops10g01300 719 Gene3D - 55 154 IPR012677 -
Rops10g01300 719 SMART rrm1_1 61 142 IPR000504 GO:0003723
Rops10g01300 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01300 Rops-Chr10 25594644 25598809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01300 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.465 0.0 1179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01300 K03253 - gmx:100817394 1370.91