Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01297 ATGGGTTCATCAGTCCTTGACGAAAACCGAAACCAAAACCAATCCATTGGTGTCAAGCGAATGTTTGATCAATTATACACAAAGCCCGAAGCTGATGATTCTCCATCTCAAGAATACTCACCCCAGAACCTTGACCCCAGAGGGTATCAGTTGGAGGTGTATGAAGTTGCAAAGAGGAGGAACACAATAGCAGTGATGGACACAGGCTCTGGTAAGACCTTGATAGCTATAATGCTTATAAAAGACATTGAGCAAGCTATCAAGTCTAGTGGTGTAAAGAAGTTGATCATTTTCTTAGCTCCCACCGTTCATCTTGTCAATCAGCAATGCAAGAATATAAAACTTCACACAGATTTTCGAGTTGAAGAATATTATGGGGCTAAAGGAGTCGATACATGGAATTTAACGACCTGGGAGAAGGAGATAAGTGAAAATGATGTACTGGTTATGACGCCCCAGATTCTCTTGGATGCTTTAAGAAAAGCATTCCTGAGTATAGAAATGATATGCTTGATGATTATTGATGAATGTCATAGAGCAACTGGCAACCATCCCTATGCAAGAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGGTCTTTGGGATGACAGCATCGCCAGTTGGTAAAAGAGGCGTTTCCTCTACTTTTGATTGTGAGGGTCAGATAGTAGAACTTGAAAACCTCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGAATGTATGTATCCCTTCAGCAAAAGAGAGTTGTAGATATTATGACCAAGCACGATTTCCTGCTTTGAGTTTAAAACCAAAGATTGAAGCCTCGTGGTTGAAGTCCGATGCATTGTTGTCAGAATTTCAAAGTAACTATAAGGATGTGGACAATAAATTTAAAATGCTGCATCAGCGGATGTCAAATGAACTTGCAAAAATTTTGCATTGCCTTGAAGATCTTGGACTCTTATGTGCTTATGAGGCTGTTAAAATCTGTCACGAGAATTTCTCCAAAATTCAAGGAGAGTGTGAAGTTTACAGGAAGGGTTATCTTCAGTGCAGAAGTGTCATTGAAGAAGTAATCCAAATAATTGAAAAATCCCTCCATCTTGGTGACAAAATGATTTTAGATGTTGAATTTGACTATTCAAAGGCAGTAGACTTGGGATACATATCTCCAAAATTACTTGAACTTATTAAACTCTTCCAGACATTTGGAGAATCTAGTCAGGTATTGTGCCTCATTTTCGTTGAAAGAATCATTACAGCTAAGGTTATCGAAAGATTTGTAAAGAAAGTTTCCCAGATATCTCATTTCAAAGTTTCCTATTTAACTGGAAACAATACATCGGTTGATGCACTAGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTCGAGGAAGGAATTCATGTGCCAGACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTTGTAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGATAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAGATCAGCTCTTTGACATTATCAGGAGTGAGCGCTCCATGACTGATGCAGCTATTAATAAAGACCATGAATCTAATTTAAGGGCGTTTACAGTGGGGAAAACAAATGCATACTCTGTGGATTCTACTGGAGCATCAGTCACTTTAGATTCTAGTGTTAGTCTGATAAATCGATATTGTGAAAAGCTCCCACGAGATAAGTACTCCTCTGCAAAGCCCACTTTTGAGTTTCTACCTGTGGAGGAGGGGGCTTACACGTGTAAATTAATATTACCACCTAATGCAGCTTTCCCAACATTAGTTGGTCCTTCGGGAAAAGATGTTCGTTTGGCAAGGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCACCAAATGGGTGCCTTAAATGAACATCTTGTCCCATTCATTGAAGATCCTTCAGAAGCTGACCATATTATGAAAAACAAAGAATCAAGTTCAGGTGCAGGTGCAGGTACCACAAAAAGAAAGGAGTTACATGGCACAGCCTGCATTCGTGCATTATGTGGTACATGGGGAGACAAACTTGGTGGAGCCAAATTTCATGCTTATAAATTTGAATTCACTTGTAATATTGTCACTGAAATTTATTCTGGATTTGTTCTTCTGATGGAGTCAAAGCTTGATGATGATGTGGGAAATACAGAGTTGGATCTTTATTTAATCTCAAAGACTGTGAAGGCTTCTGTCTCTTCATGTGGTCAAGTTGATTTGGATGCTGAACAGATGATGAAAGCAAAATGCTTCCATGAGCTGTTTTTCAATGGTTTGTTTGGGAGATTGGTTCTTAGGTCCAAAGCAGCCAAAGGGGAAAGGGGATTTTTACTTCAGAAAGACACAAATTCATTGTGGAGCCCAAAAAACTTATATTTGCTCCTACCACTCGAGAAACCAAATGATATATGTGCGGGATCTTTGCAAATACATTGGTCTGGAATCAACTCTTGTGCTTCTACTATCAAATTTTTAAGGCAGAAATTTTCGTCAGTTGCTGGAGATTGTAATGATAACGGCAAAATTTCATCACCTTGTGCTACCAATTCATCAGATGTGGAATGTGAAAGCACAAACATGATTCACTTTGCTAATTGTGTGGTTGATGTTAATAATCTGAACGATATGGTAGTCTTGGCCATTCACACTGGGAAAATGTATTGTATTATTGAAGTAGTTTTTGACCTATCTGCTGAAAGTCCTTTCGATGGAAACGAAGAAAAGTCTGAGGCGGATTGCATCACTTTCATGAATTATTTCAACAAAAGGTATGGGATTACACTGAGACATCCAAGACAGCCTTTGTTACGATTGAAGCAAAGTCACAATCCACACAATCTTCTTTTCAACTTCCACGGGGAAGATTCTGGGGACAAGTCATCACAAAATGGGCCAGTAATGCCGAAAGTGCCTGCGCATGTTCACATTCCACCTGAGCTTCTATGCCTTGTTGATATTAAAAGAGATGTGTTGAAGTCAATGTATTTGCTACCATCTCTGATGTACCGTATTGAATCTTTCATGCTATCCAGTCAGCTAAGAGAAGAGATAAATGGTCAAACTAGCAATTTCAGCATATCTAGCTCTCTGATTCTAGAAGCACTTACAACTTTAAGATGTTGTGAAAAATTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGACAATTATCTGCCAGACGACAATGGGCTGTTTGTAATTCAACCCTACATAAACTGGGAACAGATCACAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCCCGCCGTTGGGTTGCTCCTGGACAGCGCTCCATACACCCTGTTTCTTGTGATTGTGCGTTGGAAACCCTAGAAGTGCCTTTAGATGTAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTCTGTGACAGTGGTCATCGCTGGATGTGCTCAAAGACTATTTCTGACTGTGTTGAAGCTCTGATAGGTGCATACTATGTGGGTGGTGGACTGATTGCTTCACTTCATGTGATGAAATGGCTTGGGATTGATTCAGAACTTGAACCTTCCTTGGTTGATGAAGCTATCACTGCTGCATCTCTGCGCACATATATGCCAAAAGTAAATGAGATTGTAAGCCTTGAAAAGAAAATTGGATATGAATTTTCTGTCAAGGGACTCTTACTTGAGGCAATCACACATTTGTCTGAGACAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGCGACTCAGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATGTTGATCCAGGAGAGTTGACTGACTTGCGTTCTGATTCTGTCAGCAATGAAAATTTTGCTCAAGTTGCTGTAAGACGAAACCTTCACCAGCACCTTCTGCATAGTTCAGGATTATTACTGAACCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGAGAACAACACCATGTCACTCACAGGCATTAGAGTTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAATTGATACAAAGCTCAATCTTGACGAAGTGTGGAAGGTTTTCTATCCTCTGTTATCACCCATTGTTACTCCTGATAAACTTGAACTTCCTCCATGGCGTGAACTAAATCAATTATGTGACTCACTTGGGTATTTTGTAAAAGTAAAAGTAAAAGAAAATCATGAAAAGAAGGAATCCATGGAGCATGTTGAGCTTAGATTACAGCTGCCAAATGCCCTGTTGGTTCAAGAGGGGAAGGGGCCAAATAAAAAAACCGCAAAAGGAGATGCTGCTTTTCATTTATTGAAGAAACTTGAGAAGAGGGGAATTTCGTATGGTAGTAGCATGTCCAAGGGAAAAAGAGACGATTCATCTTATCTCGAAAGAGATTTTAGTATTCGCCCTTGTCAAACTGAAGAACATTCCTCAAAGCCAGTAGCACATAAAAGGCCCAAATTGGATGAGGCTAATTTAGCTGCAAGTACATCTACTGTTTCTTCGCTTGCTAAAGACTCTTCCAGTGAAGCCTCTGATTTTAGTCCATCGATTCCAGATATTTCATCGATTAATATGAAGAAGGGAGGACCGCGGACCACACTATATGAACTGTGCAAGAGACTGCAGTGGCCATTGCCTTCATTTGATTCGACAGAATATAAAGACAGGACACTATTTGAATCGTGTGAAGGCCTGGAAGGAAGCAAGGGACAGAACTGCTTTGTGTCAAAAATTGTCTTGTGCATACCCAATGATGGTAATATAGAATGCCCAGGAGATGCTAGAAGTGATAAGAAGAGCTCTTATGACTCTGCTGCAGTTCAAATGCTTTATGAGCTACAACGACTGGGAAAACTTAAGATTGGTGCACCCCAATAA 5049 0.3987 MGSSVLDENRNQNQSIGVKRMFDQLYTKPEADDSPSQEYSPQNLDPRGYQLEVYEVAKRRNTIAVMDTGSGKTLIAIMLIKDIEQAIKSSGVKKLIIFLAPTVHLVNQQCKNIKLHTDFRVEEYYGAKGVDTWNLTTWEKEISENDVLVMTPQILLDALRKAFLSIEMICLMIIDECHRATGNHPYARIMKEFYHQANEKPKVFGMTASPVGKRGVSSTFDCEGQIVELENLLDSQRYTVEDRTEMNVCIPSAKESCRYYDQARFPALSLKPKIEASWLKSDALLSEFQSNYKDVDNKFKMLHQRMSNELAKILHCLEDLGLLCAYEAVKICHENFSKIQGECEVYRKGYLQCRSVIEEVIQIIEKSLHLGDKMILDVEFDYSKAVDLGYISPKLLELIKLFQTFGESSQVLCLIFVERIITAKVIERFVKKVSQISHFKVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPDCSCVIRFDLPKTVCSYVQSRGRSRQDNSQFILMLERGNLKQRDQLFDIIRSERSMTDAAINKDHESNLRAFTVGKTNAYSVDSTGASVTLDSSVSLINRYCEKLPRDKYSSAKPTFEFLPVEEGAYTCKLILPPNAAFPTLVGPSGKDVRLARNLVCLEACKKLHQMGALNEHLVPFIEDPSEADHIMKNKESSSGAGAGTTKRKELHGTACIRALCGTWGDKLGGAKFHAYKFEFTCNIVTEIYSGFVLLMESKLDDDVGNTELDLYLISKTVKASVSSCGQVDLDAEQMMKAKCFHELFFNGLFGRLVLRSKAAKGERGFLLQKDTNSLWSPKNLYLLLPLEKPNDICAGSLQIHWSGINSCASTIKFLRQKFSSVAGDCNDNGKISSPCATNSSDVECESTNMIHFANCVVDVNNLNDMVVLAIHTGKMYCIIEVVFDLSAESPFDGNEEKSEADCITFMNYFNKRYGITLRHPRQPLLRLKQSHNPHNLLFNFHGEDSGDKSSQNGPVMPKVPAHVHIPPELLCLVDIKRDVLKSMYLLPSLMYRIESFMLSSQLREEINGQTSNFSISSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRQWAVCNSTLHKLGTDHKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCALETLEVPLDVKFHTEDPKVVVGKFCDSGHRWMCSKTISDCVEALIGAYYVGGGLIASLHVMKWLGIDSELEPSLVDEAITAASLRTYMPKVNEIVSLEKKIGYEFSVKGLLLEAITHLSETELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDVDPGELTDLRSDSVSNENFAQVAVRRNLHQHLLHSSGLLLNQISEYVKVISESENNTMSLTGIRVPKALGDLVESIAGAILIDTKLNLDEVWKVFYPLLSPIVTPDKLELPPWRELNQLCDSLGYFVKVKVKENHEKKESMEHVELRLQLPNALLVQEGKGPNKKTAKGDAAFHLLKKLEKRGISYGSSMSKGKRDDSSYLERDFSIRPCQTEEHSSKPVAHKRPKLDEANLAASTSTVSSLAKDSSSEASDFSPSIPDISSINMKKGGPRTTLYELCKRLQWPLPSFDSTEYKDRTLFESCEGLEGSKGQNCFVSKIVLCIPNDGNIECPGDARSDKKSSYDSAAVQMLYELQRLGKLKIGAPQ* 1683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01297 1682 FunFam Endoribonuclease dicer-like 1 385 548 - -
Rops10g01297 1682 ProSiteProfiles Ribonuclease III family domain profile. 1257 1402 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 Gene3D - 41 279 IPR027417 -
Rops10g01297 1682 Pfam Ribonuclease III domain 1081 1215 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 Pfam Ribonuclease III domain 1293 1401 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 Gene3D paz domain 890 1017 - -
Rops10g01297 1682 ProSitePatterns Ribonuclease III family signature. 1293 1301 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 CDD RIBOc 1063 1227 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 Gene3D Dicer dimerisation domain 576 674 IPR038248 -
Rops10g01297 1682 FunFam Dicer-like 104 895 1016 - -
Rops10g01297 1682 Gene3D Ribonuclease III domain 1243 1422 IPR036389 GO:0004525|GO:0006396
Rops10g01297 1682 Gene3D Ribonuclease III domain 1045 1227 IPR036389 GO:0004525|GO:0006396
Rops10g01297 1682 ProSiteProfiles Ribonuclease III family domain profile. 1044 1216 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 SMART helicmild6 427 514 IPR001650 -
Rops10g01297 1682 SMART riboneu5 1063 1236 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 SMART riboneu5 1272 1425 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 SUPERFAMILY PAZ domain 905 1019 IPR036085 GO:0005515
Rops10g01297 1682 SMART ultradead3 42 243 IPR014001 -
Rops10g01297 1682 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 210 IPR014001 -
Rops10g01297 1682 SMART PAZ_2_a_3 878 1043 IPR003100 GO:0005515
Rops10g01297 1682 FunFam Endoribonuclease dicer-like 1 576 673 - -
Rops10g01297 1682 Pfam Helicase conserved C-terminal domain 398 511 IPR001650 -
Rops10g01297 1682 Gene3D - 1593 1672 - -
Rops10g01297 1682 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 672 IPR005034 GO:0016891
Rops10g01297 1682 Pfam Dicer dimerisation domain 581 667 - -
Rops10g01297 1682 MobiDBLite consensus disorder prediction 1528 1546 - -
Rops10g01297 1682 Pfam Type III restriction enzyme, res subunit 57 210 IPR006935 GO:0003677|GO:0005524|GO:0016787
Rops10g01297 1682 FunFam Endoribonuclease dicer-like protein 41 279 - -
Rops10g01297 1682 SUPERFAMILY RNase III domain-like 1045 1234 IPR036389 GO:0004525|GO:0006396
Rops10g01297 1682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 529 IPR027417 -
Rops10g01297 1682 Pfam PAZ domain 905 1039 IPR003100 GO:0005515
Rops10g01297 1682 CDD SF2_C_dicer 390 522 - -
Rops10g01297 1682 PANTHER DICER-RELATED 60 1503 - -
Rops10g01297 1682 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1428 1498 IPR014720 -
Rops10g01297 1682 FunFam Dicer-like 104 1039 1228 - -
Rops10g01297 1682 MobiDBLite consensus disorder prediction 1528 1550 - -
Rops10g01297 1682 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 552 IPR001650 -
Rops10g01297 1682 ProSiteProfiles PAZ domain profile. 906 1019 IPR003100 GO:0005515
Rops10g01297 1682 CDD RIBOc 1273 1423 IPR000999 GO:0004525|GO:0006396
Rops10g01297 1682 FunFam Endoribonuclease dicer-like 1 1251 1423 - -
Rops10g01297 1682 CDD DEXHc_dicer 46 242 - -
Rops10g01297 1682 Gene3D - 387 550 IPR027417 -
Rops10g01297 1682 SUPERFAMILY RNase III domain-like 1257 1422 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01297 Rops-Chr10 25556452 25575465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01297 396 511 Eukaryotic Initiation Factors Gene Family AT3G19760 35.433 3.63e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01297 K11592 - gmx:100806831 2561.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01297 10 25556452 25575465 Rops10g01297 10 25556452 25575465 ECH
Rops2g05093 2 91307657 91320834 Rops10g01297 10 25556452 25575465 ECH
Rops11g01891 11 30594468 30614953 Rops10g01297 10 25556452 25575465 ECH