Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01292 ATGATGCACATGACCTTTTACTGGGGCAAGAAGGTGACAATCCTCATCGATTCATGGAAGACCGATTCATGGACGAGTTATGTTCTGAGTTTGGTAGCTTGCCTCATCGTCGCCGTTTTCTACCAATTTCTGGAGAATCGTCGTATTCGCCTGAAACTGTTAGCCACCGGGAAGCCCTATCCGCCGGAGATCCGGGTCCCTCTTCTGCGACGGAGGTTCGTCGGAGATGGAGCTAAGGCGGGGGTGAAGCTGTCCGGAGCGCTTCTTTTCGGGGTGAGCTCAGCGATCGGGTATTTGTTGATGTTGGCTGTTATGTCGTTCAACGGTGGGGTGTTTGTGGCCATTGTGGTTGGTCTTGCCATTGGTTACTTCTTCTTCAGGAGTGATGGTGAAGATTCTATTATCGTTGATAGTTCTTGTGCTTGTGCTTAA 432 0.5023 MMHMTFYWGKKVTILIDSWKTDSWTSYVLSLVACLIVAVFYQFLENRRIRLKLLATGKPYPPEIRVPLLRRRFVGDGAKAGVKLSGALLFGVSSAIGYLLMLAVMSFNGGVFVAIVVGLAIGYFFFRSDGEDSIIVDSSCACA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01292 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 132 IPR007274 GO:0005375|GO:0016020|GO:0035434
Rops10g01292 143 Pfam Ctr copper transporter family 4 126 IPR007274 GO:0005375|GO:0016020|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01292 Rops-Chr10 25494291 25494988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01292 1 143 Inorganic Solute Cotransporters AT5G20650 55.333 4.33e-54 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01292 K14686 - gmx:100805457 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01292 10 25494291 25494988 Rops4g01813 4 42512977 42514395 ECH
Rops10g01292 10 25494291 25494988 Rops10g01292 10 25494291 25494988 ECH