Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01291 ATGACTTCTAAAAAGATTACATGGAAGTCTGTTGTCTTGATCTTAAGTTGTTACAAGACTAAATGTCCCTTGCAGGAATCAGAGAAACAGGTTTTAAAACAAGGTTCTTTCCAAAGACTATGCCTCTCTGATATAAGCATTTCGAGCTCCACTCAGACCATTGAAGATCTTTCCACTTCCTTCGTTGGGTCGAAGCTTTATACATTCACTCTACATGAGCTAACAGAAGCAACACATAATTTCTCATGTAGTAATATGCTTGGTGAAGGTGGTTTTGGACCCGTGTACAAGGGTTTTGTTGATGATAAACTAAGACCTGGTTTGAAGGCTCAGCCTGTAGCTGTGAAACGACTAGACTTGGATGGCAAGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGATACTGTTGTGAGGATGAGCACAGGCTTTTGGTGTATGAATACATGGCAAGAGGGAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAAATTGCATTGGATGCAGCTAAAGGTCTGGCCTTCCTTCACGAAGCAGATAAGCCTGTAATATTCAGAGATTTCAAAACTTCAAATATCTTACTGGACTCGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCTAAGGATGGTCCTGAAGGTGAGGACACACATGTAACAACAACATGCATAATGGGAACACAAGGCTATGCTGCTCCTGAGTACATCATGGCAGGTCACCTTTCCACAAAGAGTGATGTGTACAGCTATGGAGTTGTTTTGTTGGAATTGCTTACTGGAAGAAGGGTAGTGGACAAGACTCGGTCAAATAGAGAGAGAAGGCTGGTGGAATGGGCAAGGCCTCTTTTGAGAGAGCAGAGAAAGCTGCCCCATATCATAGACCCAAGATTGGAAGGGCGGTTTCCTATGAAAGGAGCTATGAAGGTTGCTGCATTGACTTATAAATGCTTGAGCCAGCACCCCACTCCAAGACCCACTATGAGTGATGTGGTAAAGATCTTGGAGTCACTTCAGGACTTCGATGATGATGTGTTCATAGGACCATTTGTGTATGTGGCTGGCAGTTAG 1143 0.4366 MTSKKITWKSVVLILSCYKTKCPLQESEKQVLKQGSFQRLCLSDISISSSTQTIEDLSTSFVGSKLYTFTLHELTEATHNFSCSNMLGEGGFGPVYKGFVDDKLRPGLKAQPVAVKRLDLDGKQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIALDAAKGLAFLHEADKPVIFRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTQGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGRRVVDKTRSNRERRLVEWARPLLREQRKLPHIIDPRLEGRFPMKGAMKVAALTYKCLSQHPTPRPTMSDVVKILESLQDFDDDVFIGPFVYVAGS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01291 380 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Rops10g01291 380 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Rops10g01291 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 164 369 - -
Rops10g01291 380 ProSiteProfiles Protein kinase domain profile. 81 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01291 380 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Rops10g01291 380 Gene3D Transferase(Phosphotransferase) domain 1 164 370 - -
Rops10g01291 380 Gene3D Phosphorylase Kinase; domain 1 43 163 - -
Rops10g01291 380 CDD STKc_IRAK 87 362 - -
Rops10g01291 380 PANTHER OS01G0588500 PROTEIN-RELATED 53 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01291 Rops-Chr10 25491145 25493386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01291 68 359 Glycoside Hydrolase AT3G07070 52.542 3.47e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops10g01291 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01291 - - gmx:100805771 652.899