Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01282 ATGGCGACTCATCTGCTCAGGCATTCTCTCTCCCCACAACCTAAGCTCTGTTTCAATCACACAGCCAATAATAATGCACACTTCATTTCGATGCTGCCGGCAAAACGTCGTCGCAACCGCAACCGTCACTGCCGGGAAATTCGCCTGCCAAATTTTGTCGTATCGAACTCCTTTAGGACTGAGATTGGCTCGCCGGAATCGGCTCTTCTTCAAGGCCGTGGACAGAGCAAAGACTCGCCGATTCTACTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCTTATCCGCCGACGACCGAGTCGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTTAAATTGAGACATCTGGAGGAGGAGCCGTCGAGCGTTGCGGAGAGTCTTGCTCGGCGGTTGAGCGATTGCGGTTTTCCGACGAAGAGAAGAGCGTCGGGTTTGGGAGTGGCGGAAAATGTAAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAAGAACTAGTCGTTAAGGGTAGAAACCGTGTTGCTTTCGCTTGGACTTTGGTGGCATTGTGTTGTGGATCGCACGCTTCGCATATTCTTCATTCTTTAGGGATTCACATTGCTCATGGATCGTCTTGGGAAATTCTTCATAATTCATACGTGAAAGGTGGTTTAGCTTTGGGCTCTCTTTTGGGACCTGGACGAGAGTTACTATTTGATGGCCTAAACGCATTTAAGAAGGGATCGCCAAATATGAACTCTCTCGTGGGATTTGGTTCTATAGCTGCTTTCATCATCAGTTCGATCTCACTACTTAACCCCGGACTGGCATGGGATGCATCATTCTTTGACGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTTCTTTCACTGATATCTACCCAGTCAAGACTTGTGATTACTTCATCACAAGATTCACCATCTACTGACACAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGTGACTTGGTGTTGGTGTTGCCAGGAGAAACCATCCCTATAGATGGAAGGGTCATTTCCGGAAGAAGCGTTGTGGACGAATCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTGTCAGCAGGAACTATAAATTGGGATGGCCCTTTATGGATTGAAGCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCCGTACAGAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGATCAAACATATTTTCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGTTTAAAACTTGCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCCACGCCCACAGCAATTCTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGAGGAGGGGATGTGCTGGAGCGCTTGGCCAGCATAAATTATATTGCTCTAGACAAGACAGGAACCCTCACCACAGGAAAACCAGTTGTGTCTGCCATAGGCTCTATTCATTATGAAGAGTCAGAACTTCTTCGGCTTGCTGCCGCAGTGGAGAAAACTGCATCTCATCCAATAGCAAAGGCCATTGTCAATAAAGCTGCGTCATTAGAGTTGGTCCTTCCAGTCACAAAAGGACAGTTAGTTGAACCAGGTTTTGGAACCTTAGCGGAAATAGATGGTCGTCTGATTGCAGTTGGGTCTCTAGAATGGGTCCATGAACGCTTCCAGACAAAAATGAACCCATCTGATTTGATGAATCTGGAACGTACTTTGATTAACCATCCATCAAATACATCATCTTCAAAGTATTCGAAAACTGTTGTCTATGTTGGATGTGAGGGAGAAGGCATCATTGGTGCTATTGCCATCTCTGACATTGTGCGTGAAGATGCTGAATCTACCATAATGAGGCTCAAGCAGAAGGGGATTAAAACGGTCCTCTTATCAGGAGACAGGGAAAAGGCAGTGGCAACAATAGCAGAGACAGTTGGAGTTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAGCAGAAATCTGGATTTATTTCGTCTCTGAAAGCTGCTGGACATCATGTTGCGATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGCATTGCTCTTCAGAATGAAGGTCAAGAGAATGCTGCCTCAGATGCAGCATCCATTATACTTCTGGGGAACAAAATTTCACAAGTTGTGGATGCACTAGACCTAGCACAGGCAACAATGGCAAAAGTGTACCAAAATTTGTCTTGGGCTGTAGCCTATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCAATTTCACTTTGCTATGACACCTTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTAGCAACTCACTGCTTCTTCAGCTTCATGGGTCTCAGACCTCCAGAAAGGGCTCAGTCCAGTGA 2646 0.4622 MATHLLRHSLSPQPKLCFNHTANNNAHFISMLPAKRRRNRNRHCREIRLPNFVVSNSFRTEIGSPESALLQGRGQSKDSPILLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRHLEEEPSSVAESLARRLSDCGFPTKRRASGLGVAENVRKWKELVKKKEELVVKGRNRVAFAWTLVALCCGSHASHILHSLGIHIAHGSSWEILHNSYVKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSQDSPSTDTICVEVPTDDIRVGDLVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLWIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFIGSNIFSDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTTGKPVVSAIGSIHYEESELLRLAAAVEKTASHPIAKAIVNKAASLELVLPVTKGQLVEPGFGTLAEIDGRLIAVGSLEWVHERFQTKMNPSDLMNLERTLINHPSNTSSSKYSKTVVYVGCEGEGIIGAIAISDIVREDAESTIMRLKQKGIKTVLLSGDREKAVATIAETVGVENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEGQENAASDAASIILLGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFHFAMTPSLSGGLMALSSIFVVSNSLLLQLHGSQTSRKGSVQ* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01282 881 ProSitePatterns E1-E2 ATPases phosphorylation site. 545 551 IPR018303 -
Rops10g01282 881 NCBIfam HAD-IC family P-type ATPase 291 848 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops10g01282 881 PANTHER ATP7, ISOFORM B 75 869 - -
Rops10g01282 881 Gene3D - 73 152 - -
Rops10g01282 881 Gene3D - 305 430 - -
Rops10g01282 881 NCBIfam heavy metal translocating P-type ATPase 253 867 IPR027256 GO:0006812|GO:0016020|GO:0019829
Rops10g01282 881 Gene3D - 554 687 IPR023299 GO:0000166
Rops10g01282 881 CDD HMA 83 147 IPR006121 GO:0046872
Rops10g01282 881 SFLD Haloacid Dehalogenase 526 809 - -
Rops10g01282 881 SUPERFAMILY HAD-like 541 864 IPR036412 -
Rops10g01282 881 FunFam Copper-transporting ATPase 1, putative 305 430 - -
Rops10g01282 881 Pfam haloacid dehalogenase-like hydrolase 539 770 - -
Rops10g01282 881 ProSiteProfiles Heavy-metal-associated domain profile. 79 149 IPR006121 GO:0046872
Rops10g01282 881 SUPERFAMILY Calcium ATPase, transduction domain A 337 426 IPR008250 -
Rops10g01282 881 FunFam Copper-transporting ATPase PAA2, chloroplastic 554 687 - -
Rops10g01282 881 Pfam Heavy-metal-associated domain 83 146 IPR006121 GO:0046872
Rops10g01282 881 Gene3D - 534 807 IPR023214 -
Rops10g01282 881 Pfam E1-E2 ATPase 341 523 - -
Rops10g01282 881 SUPERFAMILY HMA, heavy metal-associated domain 81 136 IPR036163 GO:0046872
Rops10g01282 881 PRINTS P-type cation-transporting ATPase superfamily signature 543 557 - -
Rops10g01282 881 PRINTS P-type cation-transporting ATPase superfamily signature 376 390 - -
Rops10g01282 881 PRINTS P-type cation-transporting ATPase superfamily signature 679 690 - -
Rops10g01282 881 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Rops10g01282 881 PRINTS P-type cation-transporting ATPase superfamily signature 701 711 - -
Rops10g01282 881 SFLD p-type atpase 526 809 IPR044492 -
Rops10g01282 881 CDD P-type_ATPase_HM 181 866 - -
Rops10g01282 881 SUPERFAMILY Calcium ATPase, transmembrane domain M 283 537 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01282 Rops-Chr10 25353732 25363492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01282 244 868 Primary Pumps ATPases AT1G63440 37.325 2.24e-114 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01282 K17686 - gmx:100127402 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01282 10 25353732 25363492 Rops10g01282 10 25353732 25363492 ECH