Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01273 ATGGATGCTAATAAGCATCAAGGCGGTGAAGTAAGCATGACTGAGAAGAAAAGAGAAGTGGTGGTGGCGATTCCAAATGTGGGTGGAGAGAGCCATGAGTTGAAAGGGGTTGAATCTTTGACCCCCAAGCAAAGCAGGGTGGATTCGCCTCAAACAAGAAGCTACAACGAGTTTGCTGCAAAGTCGCCACCTTTAAACTGTGGTTCCCCTGAGATAAGGTTCATTCCTAGTCCAAATAAGCCTCCCAAAGTTCCTGCTACCAATGCCAACCTTACCAGAAGAAAATCACTAGCAAGGTCAGTGTATTCCAAGCCCAAATCAAGGTTTGGTGAACAACCTTATCCCACTGATGGGACCATTTTAGAAGAGAATGGCACTTCAACTTTGCAAGAACAAATGGCTGTTAGTTCACCATGTAGGAACTCGTTCAATAAATCATCACCTAATAACAATTCTGGGACGGTTAATAGAACCATCTCCATCACTTCTGTTATCACTCCCAAGACACCATTAATGGCGTCTCCCTGGGGTGAGGATATGGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAGGCAACCGTAAGAGACTGAAAACTAAGGCTTTGATTGAATGGTTTGTGTTTGTGTGCATTGCTGGTAGCCTGATAGCTAGCTTAACAGTTGACAAACTGAAAAGGACAAAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTCACCTTTTGTGGCATGTTAGTTACCAGATGGTTCATGCACATTATTGTTTTCTTGATTGAATTGAACTTCTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAATGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGCTAATCAGTCGTGGGGTCCAGAGATCTGAATTGGCCACAAAATTTTTGAATGGTGTAACATGGACCCTTGTTTCCCTTCTCATTGGGGCATTCCTGTGGTTCATAAAGACATTGTTGCTTAAGATTTTGGCATCAAATTTCCATGTCAAAACTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAGTACATTCTGCAGACTCTTTCTGGGCCTCCACTTATAGAAGAGGCTGAGAAGGTTGGGGGATCGCAAAGTATTGGTCATTTTAGTTTCAGGAGTACAACTGGTAAAGGTGGCACAAAGAACCAGGTTATTGATATGGCCAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCTGCATGGAACATGAAGATTTTGGTAGATGCAGTGACAAATTCAAGACTGTCCACACTCTCTAATTCATTAGATGAAAGTTATTATGATGGAGAAAATGAACAAACTGATAAAGAGATTACAAATGAGATGGAAGCTACTGCTGCTGCCTTTCACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATCGATGAGGATGAGCTCCGGAGGTTCATGATTAAGGAAGAAGTGCGTGCGGTATATCCCCTACTTGCCCAACCAGAGACGGGAACAATTACCAGAAAGTCTTTAACAGACTGGTTGTTGAAGGTGTATCAAGAACGTAAAGCATTGGCACATGCATTAAGCGACACCAAAACAGCTGTGAAACAATTAAACAAGCTTGTGACCGTGATCCTAATAGTGGTGACAGCAATAGTGTGGCTTCTACTTATGGGGATTGCAACGACGAAAGTAATTTTATTCCTCTCATCACAGCTAGTAGTTGCATCTTTCATGATTGGAAACACATGCAAGAATATATTTGAAGCTATCATCTTCGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGCTGTAGATGGTGTTGAGCTATTGGTTGAAGAAATGAACATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTACCCAAACTCTGTGCTGGCCACAAAACCGATTAGCAATTATTACAGAAGCCCTGATATGGGTGATGGTATAGAGTTCTCAATTGATTTTACAACATCAGCTGAGAAAATTGGGGCACTGAAAGAAAAAATAAAGAGGTACTTGGAGAGAAATCCACAATACTGGTATCCTAATCACAACTTAGTAGTGAAGGAGATTGAAAATGTAAATAAGATCAAGATGGGTCTCTATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAGACCAAGCGGAGAAGCGAACTGGTGATGGAAATAAAGAAAATGTTTGAAGAGCTCAATATCAGATACTACCTTCTTCCACAAGATGTTCATATCAGACATATGGAACCAGATACAAATGTACTCAATAGATGA 2325 0.4095 MDANKHQGGEVSMTEKKREVVVAIPNVGGESHELKGVESLTPKQSRVDSPQTRSYNEFAAKSPPLNCGSPEIRFIPSPNKPPKVPATNANLTRRKSLARSVYSKPKSRFGEQPYPTDGTILEENGTSTLQEQMAVSSPCRNSFNKSSPNNNSGTVNRTISITSVITPKTPLMASPWGEDMDEIIYKKVELSKGNRKRLKTKALIEWFVFVCIAGSLIASLTVDKLKRTKIWGLGFWRWCVLVMVTFCGMLVTRWFMHIIVFLIELNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLISRGVQRSELATKFLNGVTWTLVSLLIGAFLWFIKTLLLKILASNFHVKTFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSQSIGHFSFRSTTGKGGTKNQVIDMAKLHKMKQEKVSAWNMKILVDAVTNSRLSTLSNSLDESYYDGENEQTDKEITNEMEATAAAFHIFRNVAAPGCTYIDEDELRRFMIKEEVRAVYPLLAQPETGTITRKSLTDWLLKVYQERKALAHALSDTKTAVKQLNKLVTVILIVVTAIVWLLLMGIATTKVILFLSSQLVVASFMIGNTCKNIFEAIIFVFVMHPFDVGDRCAVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDGIEFSIDFTTSAEKIGALKEKIKRYLERNPQYWYPNHNLVVKEIENVNKIKMGLYVTHTMNFQEFGEKTKRRSELVMEIKKMFEELNIRYYLLPQDVHIRHMEPDTNVLNR* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01273 774 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 64 770 IPR016688 -
Rops10g01273 774 SUPERFAMILY Sm-like ribonucleoproteins 595 655 IPR010920 -
Rops10g01273 774 MobiDBLite consensus disorder prediction 97 117 - -
Rops10g01273 774 Gene3D - 606 655 IPR023408 -
Rops10g01273 774 PIRSF Memb_At2g17000 5 774 IPR016688 -
Rops10g01273 774 Pfam Mechanosensitive ion channel 546 752 IPR006685 GO:0016020|GO:0055085
Rops10g01273 774 FunFam Predicted mechanosensitive ion channel 606 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01273 Rops-Chr10 25277577 25280725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01273 37 762 Mechanosensitive Ion Channel Family AT5G12080 59.041 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01273 K22048 - gmx:100803107 1219.14