Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01270 ATGAACTTCAGTAAAAGTGCTCAAACTCACCAGAACCTGTCTAGGCAATCATCCAAGTCGAATTCAGGGGCGAAGAAAGAGCCAGTTAGCCCTCTCCCCAGTGGATGCTGTCGAGGCTTCAGCAGCGTTAAGACTGTGTCATCCACCACATCAACCTTGCAACAGCATCAGCTCCAGCAGCGTTATGAAAAACTGGAAGTAAAGGTGGCAGGTTTGGAAAAGGAGGTGGAAAAGCAGACAGAACTCCGAGTAATGTATAAGAAAAGAATGGAGAGGGCGCAAGATTACTTAAGGCACTGCCTCCAAATAGCACAGGAGAATGGAATCTTGGACCTTATTACCCACTCCAAAGGTGAACCTCAACAATCTCCTCTTCTCTCTTTGTACACCATCAACTCCACTCCCACCACCAGCCCTCAAATTCTCACTCCTCCTCCACCACACCACCACCCTAATCTAGTGGCCATCATTGATCAAGCCAAAATCAATGGATGGTATATTAATCCCACTGAGATTGAGTTGGAGGAGAAAATAGGGCAGGGAAGCACGGCAGAGATTCATAGAGGAACATGGCGCGGATTTGATGTGGCGGTGAAGTGCATGTCTGCTGAATTCTTCAGCACAAACACAAATGGTGTTGAGTTCTTCGCTCAGGAGCTTGAAACTCTATCAAAGCAGCGACACCGTTTTGTGCTTCATCTTATGGGTGCATGCTTTGATCCTCCTCATCATGCCTGGGTGGTTACTGAGTATCTAAGCACCACATTGAAGGAGTGGCTATATGGCCCTGGCAAAAGACGCAAAAACAGAATAGTGCCACTTCCTCCTTTCAAAGACAGAGTGATGAGGGCCTTGGAAATAGCCCAAGCCATGCAGTATCTGCATGAACAAAAGCCCAAAGTCATTCACCGTGATTTGAAGCCCAGTAACATCTTCTTGGATGATGCCATGCATGTTAGAGTTGCTGACTTTGGACATGCCCGCTTCTTGGGAACATACGTGTATATGGCACCAGAGGTGATTCGATGTGAGCCCTATAATGAAAAATGTGATGTGTACAGTTTTGGAATCATACTGAACGAGCTTCTAACTGGAAAATACCCCTACATTGAGACAGAATTTGGTCCCGCAAAGATTGCTATGGAAGTTGCGGAGGGCAAGCTGCGACCTATGCTTCCGTCACGGGATGATGGTGACCAACTGAGAGAGCTTATTGACCTAATATGTCTTTGCTGGGATGGAAATCCATCTGTTCGACCCTCCTTTGCAACCATTGGCCGTAGCCTCAAAGGCTATGCTAAGAGGGCCTTCAGTGTTCCAATTAGTGTATCAAATATAAAATAA 1344 0.4643 MNFSKSAQTHQNLSRQSSKSNSGAKKEPVSPLPSGCCRGFSSVKTVSSTTSTLQQHQLQQRYEKLEVKVAGLEKEVEKQTELRVMYKKRMERAQDYLRHCLQIAQENGILDLITHSKGEPQQSPLLSLYTINSTPTTSPQILTPPPPHHHPNLVAIIDQAKINGWYINPTEIELEEKIGQGSTAEIHRGTWRGFDVAVKCMSAEFFSTNTNGVEFFAQELETLSKQRHRFVLHLMGACFDPPHHAWVVTEYLSTTLKEWLYGPGKRRKNRIVPLPPFKDRVMRALEIAQAMQYLHEQKPKVIHRDLKPSNIFLDDAMHVRVADFGHARFLGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLTGKYPYIETEFGPAKIAMEVAEGKLRPMLPSRDDGDQLRELIDLICLCWDGNPSVRPSFATIGRSLKGYAKRAFSVPISVSNIK* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01270 447 Pfam Protein kinase domain 173 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01270 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Rops10g01270 447 Coils Coil 55 82 - -
Rops10g01270 447 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 44 431 - -
Rops10g01270 447 SMART serkin_6 172 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01270 447 SUPERFAMILY Protein kinase-like (PK-like) 146 425 IPR011009 -
Rops10g01270 447 MobiDBLite consensus disorder prediction 1 27 - -
Rops10g01270 447 Gene3D Phosphorylase Kinase; domain 1 160 252 - -
Rops10g01270 447 ProSiteProfiles Protein kinase domain profile. 172 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01270 447 CDD STKc_MAP3K-like 178 425 - -
Rops10g01270 447 ProSitePatterns Protein kinases ATP-binding region signature. 178 199 IPR017441 GO:0005524
Rops10g01270 447 Gene3D Transferase(Phosphotransferase) domain 1 274 439 - -
Rops10g01270 447 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01270 Rops-Chr10 25264341 25267068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01270 116 440 MAP Kinase Kinase Kinase AT5G03730 35.312 5.98e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Rops10g01270 Pkinase 3.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01270 - - gmx:100810435 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01270 10 25264341 25267068 Rops10g01270 10 25264341 25267068 ECH