Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01267 ATGGAAGATAGTTTTGGTTCTCCTTATAATGACCCATTTGAAAGTCCTTTAAGCCCAAGTTTTTTCAATGTTAGCAACTCCATACTAGACGATTTATCCAATGATAATGATGTACCCTTTGCACTGCCCCAACAAAATCATTATGAACTTCAACAGGGTAATGATTCATCCAACAGTAATGTACCCCCTGCACAGCCCCAACAAAATCATCATGGAGTTCAAAAGGGTAATGATCACTTTCCGGATTCAATGGTTCAAGATCAATATGTGCACAATAATTTTTCCTTTGGAGGAGCAGGGAACATGGAAACGGATACATCAAAATTGCATGGGGATCAAAGTCAGCCGGCAAATGAGAATCTGGGGTCACAGAATGACAACGTTGCGATCTCACTTGATTATTGGCCACCGACTCCAGTTCCATTTTTTTGCAGTTGCTGTCAAGTTCTGAGAGAAATAGTTTACACCAATGGTACTTCCTTTGAAAAGCTTGAGATTCATGGAAGGCTTGGGATTATTACCCATGCAATTTACCATCATCAGAATATTAATGGGGATCCTTCAAACAAAATTCAATATGAAATGATTGATTTTTGCCATAGAAACATTTTAGAAATCAAGCATTTCCTAGAGCAGTACTGTCTGGAGCGTGATTCAGCAGGCTACTTAATTTTGCAAGACCCCATGTCTGCATATTATGATGCCCTATGCACTGGATTAGACTGGGCTGAAGATTTAAATGAGGTAGCTGCTGATATGAATCAAAACAATTCAGAAGAACCACAAGTTGAAGAAATGGACCAAGAAGCTGACAATGGAACCAGTTCTAGACCTCCCCTTGCGGCACAGAGGGAGAGGGTGGGGAAGATGGGATTGAGTGATTTCAGCGACTACTTTCATCTACCAATTGATGAAGCAGCAAAAAAAGTGAACTTATGCCCCACTGTTGTGAAGAAAATTTGCCGTAAAGGAGGATTAGGAAGATGGCCTTTCAGAAAGGTGAAGAGCATTTTGAAGCAGATTGAGATGCTGAGAGGTGCATTAAAATCAGCAGATGCAATGACAAGGGCAAAAGCTAAAGCGGAAATTAACAGACTTCAGCAAGAAATGATTTACCGTTGTGGTGGTATTGCTCCAACCGGACTACCTAATCGCGTTTAA 1161 0.4065 MEDSFGSPYNDPFESPLSPSFFNVSNSILDDLSNDNDVPFALPQQNHYELQQGNDSSNSNVPPAQPQQNHHGVQKGNDHFPDSMVQDQYVHNNFSFGGAGNMETDTSKLHGDQSQPANENLGSQNDNVAISLDYWPPTPVPFFCSCCQVLREIVYTNGTSFEKLEIHGRLGIITHAIYHHQNINGDPSNKIQYEMIDFCHRNILEIKHFLEQYCLERDSAGYLILQDPMSAYYDALCTGLDWAEDLNEVAADMNQNNSEEPQVEEMDQEADNGTSSRPPLAAQRERVGKMGLSDFSDYFHLPIDEAAKKVNLCPTVVKKICRKGGLGRWPFRKVKSILKQIEMLRGALKSADAMTRAKAKAEINRLQQEMIYRCGGIAPTGLPNRV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01267 386 MobiDBLite consensus disorder prediction 50 74 - -
Rops10g01267 386 MobiDBLite consensus disorder prediction 50 83 - -
Rops10g01267 386 Pfam RWP-RK domain 290 337 IPR003035 -
Rops10g01267 386 ProSiteProfiles RWP-RK domain profile. 277 357 IPR003035 -
Rops10g01267 386 MobiDBLite consensus disorder prediction 256 280 - -
Rops10g01267 386 PANTHER PROTEIN RKD4 132 370 IPR044607 GO:0003700
Rops10g01267 386 MobiDBLite consensus disorder prediction 95 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01267 Rops-Chr10 25192589 25194646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01267 261 351 NLP Transcription Factor Family AT2G17150 34.737 2.06e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops10g01267 RWP-RK 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01267 - - aprc:113850591 369.007