Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01262 ATGGACGCAGGAACACCGTACGATCCCCGAACGGTGGAGGAGGTCTTCAGGGATTTCAAGGGTCGTAGAGCTGCCATCATCAAGGCCCTCACCACTGATGTTGAAGAGTTCCATCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAACAATGGGAAGTCAATCTACCTGCTGAGGAGGTGCCTCCAGAACTTCCAGAGCCAGCTTTGGGTATCAACTTTGCTAGAGATGGGATGCAAGAGAAGGACTGGCTATCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCAGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGGTGATAGGAAGCGACTGTTTAATATGATAATTGATCTTCCAACAATATTTGAGGTTGTTACAAGCATGGCCAAGAAACAAGGAAAGGAAAAGTCGCCAGTTTCTAATCATAGCAGTAACAAATCCAAATCGAACTCCAAGAGAGGTTCTGAATCTCAAATGAAGTATTCAAAGGCAATGCAAACAAAGGATAGGGATGAGGACGGTTTAGAAGAGGAAGATGAAGAGGAGCATGGAGAGACTCTGTGTGGGGCATGTGGACAGAACTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAGGTGGTTTCATGGAAAATGTGTGAAGATCACCCCTGCAAGGGCTGAGCATATCAAGCAGTACAAATGTCCATCTTGCAACAACAAAAGAGCTCGACCTTGA 762 0.4501 MDAGTPYDPRTVEEVFRDFKGRRAAIIKALTTDVEEFHQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKGDRKRLFNMIIDLPTIFEVVTSMAKKQGKEKSPVSNHSSNKSKSNSKRGSESQMKYSKAMQTKDRDEDGLEEEDEEEHGETLCGACGQNYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPSCNNKRARP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01262 253 CDD PHD_AL_plant 199 249 IPR044104 -
Rops10g01262 253 MobiDBLite consensus disorder prediction 144 191 - -
Rops10g01262 253 Pfam PHD-finger 200 248 IPR019787 -
Rops10g01262 253 SMART PHD_3 199 247 IPR001965 -
Rops10g01262 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Rops10g01262 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Rops10g01262 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Rops10g01262 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Rops10g01262 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Rops10g01262 253 MobiDBLite consensus disorder prediction 150 174 - -
Rops10g01262 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Rops10g01262 253 FunFam PHD finger alfin-like protein 192 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01262 Rops-Chr10 25171494 25175329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01262 1 252 Alfin-like Transcription Factor Family AT3G42790 75.099 5.53e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops10g01262 Alfin 3e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01262 K26274 - pop:7476667 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01262 10 25171494 25175329 Rops10g01262 10 25171494 25175329 ECH