Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01261 ATGAGTTTGAGTGCTGCAGAGGATGATGATGCTTCAGAAATTCACATACCAACAGAGATTGATTGGCACATGCTTGACAAGTCCAAGTTTTTCTTCTTAGGCGCCGCCTTATTCTCTGGTGTTTCAGCTGCTCTTTATCCTATGGTCGTGTTGAAGACTCGCCAACAGGTTTCTTCAGCACAATATTCTTGTCTCAACATGTCATGTGCCATTATGCGCTATGAAGGGTTCAGGGGTTTTTACAAAGGTTTTGGTACTTCTTTGATGGGAACCATCCCTGCTAGAGCACTTTACATGGCTTCACTTGAAGTCACCAAGAGTAATGTTGGCACTGCTTTTGTTGAATTGGGTTTCTCAGATACCACTGCTACTGCCATAGCCAGTGCCGCAGCTGGGGTCACTTCTGCCATGGCTGCACAATTAGTTTGGACCCCAGTTGATGTTGTGAGCCAGAGACTTATGGTTCAAGGCAGTGGTTGCGGTAAAAGTATTCTAGCTAATCTTAACTCTGATAATTACAGAAATGGCATTGATGCCTTCAGGAAAATTCTATGTGCTGATGGACCAAGAGGGTTTTATAGGGGATTTGGGATTTCAATATTGGCTTATGCACCCTCCAATGCTGTTTGGTGGACTTCATATTCTATGGTCCATAGGCTCATATGGGGTGCTTTTGGTTGCTATATGGGTAAGAGGGAAGAGAATAATGGGTGTGGTTTTAGGCCTGATTCCAAGGCAATTGTAGGTGTACAAGGGTTAAGTGCTGTTGTGGCTAGTGGGGTCTCAGCAATCGTAACCATGCCCCTTGACACTATCAAGACAAGGTTGCAGGTGTTGGATGCAGAGGAGAATGGGCGAAGAAGGCCTTTAACTTTTGTGCAGACGGTTAGGAATTTGATGAAGGAAGGTGGCATGCTTGCTTGTTACAGAGGATTGGGACCAAGGTGGGCTTCAATGTCCATGTCTGCAACAACCATGATTACTACTTACGAGTTTTTGAAACGTATGTCTACCAAGAGTCAAGAGAAATTGACTGCACAGTAA 1044 0.4454 MSLSAAEDDDASEIHIPTEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSAQYSCLNMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMASLEVTKSNVGTAFVELGFSDTTATAIASAAAGVTSAMAAQLVWTPVDVVSQRLMVQGSGCGKSILANLNSDNYRNGIDAFRKILCADGPRGFYRGFGISILAYAPSNAVWWTSYSMVHRLIWGAFGCYMGKREENNGCGFRPDSKAIVGVQGLSAVVASGVSAIVTMPLDTIKTRLQVLDAEENGRRRPLTFVQTVRNLMKEGGMLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKSQEKLTAQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01261 347 PRINTS Mitochondrial carrier protein signature 255 277 IPR002067 GO:0055085
Rops10g01261 347 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Rops10g01261 347 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Rops10g01261 347 SUPERFAMILY Mitochondrial carrier 23 333 IPR023395 -
Rops10g01261 347 Gene3D Mitochondrial carrier domain 27 346 IPR023395 -
Rops10g01261 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Rops10g01261 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 246 336 IPR018108 -
Rops10g01261 347 Pfam Mitochondrial carrier protein 124 222 IPR018108 -
Rops10g01261 347 Pfam Mitochondrial carrier protein 252 340 IPR018108 -
Rops10g01261 347 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Rops10g01261 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 220 IPR018108 -
Rops10g01261 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 12 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01261 Rops-Chr10 25165765 25167532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01261 1 342 Chloroplast and Mitochondria Gene Families AT1G72820 65.805 1.67e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01261 K15121 - gmx:100784202 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01261 10 25165765 25167532 Rops10g01261 10 25165765 25167532 ECH