Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g01257 | ATGACAGATAAAAATTCAAGACCACCGGATTCAACTGACAGTGATTTCACTAACCAGTGGCCTTTGGAGCTCTCTGAGTACTTGAAGTTTGATGATGATCCAGATGATGATCCGGAGTCATTTGCTTCTGGGCATGTTTTGAACCAGGACAATCAAGCTGATGAAGTAGGTGTCTTTGGAGGAAGTGGCAGCCACTTTGAGGGGTCTTCTAGTAGAGAAGTTAGCAGTGAAAGTGAGAAGAAGGAAGCTAGAGATAGAGTCGCGTTCAAAACCGAGTCAGAGGTTGAAATACTGGATGATGGCTTCAGGTGGAGGAAGTATGGAAAGAAGATGGTGAAAAACAGCCCCAATCCAAGGAACTACTATAGGTGTTCAGTGGACGGATGCCCGGTTAAGAAGAGAGTTGAGAGAGACAGGGATGATCCAAGGTATGTGATAACAACCTATGAAGGCATCCATACTCACCCAAGTTCTTGA | 477 | 0.4486 | MTDKNSRPPDSTDSDFTNQWPLELSEYLKFDDDPDDDPESFASGHVLNQDNQADEVGVFGGSGSHFEGSSSREVSSESEKKEARDRVAFKTESEVEILDDGFRWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDRDDPRYVITTYEGIHTHPSS* | 159 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g01257 | 158 | Pfam | WRKY DNA -binding domain | 99 | 156 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Rops10g01257 | 158 | ProSiteProfiles | WRKY domain profile. | 93 | 158 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Rops10g01257 | 158 | MobiDBLite | consensus disorder prediction | 27 | 82 | - | - | |
Rops10g01257 | 158 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 52 | 157 | IPR044810 | GO:0003700 | |
Rops10g01257 | 158 | FunFam | WRKY transcription factor 57 | 84 | 158 | - | - | |
Rops10g01257 | 158 | SUPERFAMILY | WRKY DNA-binding domain | 91 | 156 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Rops10g01257 | 158 | Gene3D | WRKY domain | 85 | 151 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Rops10g01257 | 158 | SMART | WRKY_cls | 98 | 157 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g01257 | Rops-Chr10 | 25139602 | 25141031 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g01257 | 35 | 157 | WRKY Transcription Factor Family | AT5G26170 | 56.115 | 9.44e-45 | 143 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Rops10g01257 | WRKY | 1.7e-25 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g01257 | - | - | gmx:100819462 | 254.988 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops10g01257 | 10 | 25139602 | 25141031 | Rops10g01257 | 10 | 25139602 | 25141031 | ECH |