Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01253 ATGGAGGAGATGTTGGCCACGGTTGCAGTGCCATTAAGAGTAGGTAATTCAGCTTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCCAGACTTAAGCTAATGGCAGATGCAGGGTTGTTATCCAATTCTATTACTCAGGTTTCCACTGAGACTTTTGTTGGTTCTGATGAGGATCATAATGGTGCCAATATGGAGGATGAAGGGGGTATTACAGCAGCCACGCCACCAAAGCAGGGAAGAGAAGGAGACATTCCATTGTTGGATATGATATCTCAAAATACAAGCACTTTTGTCGTTGGTGATGAAGTTTTAACCCCGGAAATTGAGGAGGATGATTCTTTATCATTGGAAGGTGATCCAATTATTGATAGCTCATCTCTTTCAGTAGCCAGTGAGAAGATTTGCGGAGATGAGTTCATAAGTTCTGAAATTACTTCAGATTTTCGGACAAGAAATTCCATAGACATAGAGAAGAGCATTTCTGCTGTCAATGTTGTCGCCAGGGCTGCTGATTTGGATGAGTCAAATGTGGAGGCAGGTATCATGAGTGAATCCCTTGCTGTAGCAGCAAGCCTTGAAGAAGAGACAAGAGTTAGATCTGGCCCAGAGCCTACTAATGGTGTTCTTCATCAACTACATCTGGAAAAGGGGTTGAGTGGTACAGCTGGTCGCAGTGTTTTTGAATTGGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCAGTTGCAATTGTACCTCGATTTTTGAAAATTCCTATTCAAATGCTAATTGGTGACAGGGTACTTGATGGAATGAACAAGTGTTTCAGTCAGCAGACAATTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGTCGCGATCATTTGCATTTGGCCTTGGCTGAGGAAATAGAACTTATCAAAGAAGGTCTAATAGTTGGAAGTACCAAGGATGATTGTCAAGATCAGTGGAAAAAAACTTTCACCAATTGTTTTTCAAAGGCTGATGCTGAAGTTGGAGGGAAAGTTAACGGTGAACCTGTTGCCCCAGAAACTGTTGGGTCCACTGCTGCTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGTGGTTCTGTGTCGTGGCAAGGAACCCATGGCATTATCTTTAGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGGAAGGTGATACAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAGTGTCAAGGTCAATTGGTGATAGATATCTGAAGCCATGGATTATTCCGGAACCAGAAATTACGTTTCTTCCTCGTACAAAAGATGATGAATGTCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACGAATGAAGAGGTGTGTGACCTAGCTCGGAGACGTATACTTCTCTGGCACAAGAAAAATGGTTCGACACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCGCAAGCAGCTGCAGAATACCTATCAAACCGTGCTCTTCAAAAAGGAAGCAAAGATAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAACGAAAATTTAAGAGCAAGACATGA 1653 0.4271 MEEMLATVAVPLRVGNSACDKPTIATHMDVSRLKLMADAGLLSNSITQVSTETFVGSDEDHNGANMEDEGGITAATPPKQGREGDIPLLDMISQNTSTFVVGDEVLTPEIEEDDSLSLEGDPIIDSSSLSVASEKICGDEFISSEITSDFRTRNSIDIEKSISAVNVVARAADLDESNVEAGIMSESLAVAASLEEETRVRSGPEPTNGVLHQLHLEKGLSGTAGRSVFELDCTPLWGFTSVCGKRPEMEDAVAIVPRFLKIPIQMLIGDRVLDGMNKCFSQQTIHFFGVYDGHGGSQVANYCRDHLHLALAEEIELIKEGLIVGSTKDDCQDQWKKTFTNCFSKADAEVGGKVNGEPVAPETVGSTAAVAIICSSHIIVSNCGDSRVVLCRGKEPMALSLDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAVSRSIGDRYLKPWIIPEPEITFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRILLWHKKNGSTLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01253 550 ProSiteProfiles PPM-type phosphatase domain profile. 236 540 IPR001932 -
Rops10g01253 550 PANTHER PROTEIN PHOSPHATASE 191 540 IPR015655 GO:0004722|GO:0006470
Rops10g01253 550 SUPERFAMILY PP2C-like 232 541 IPR036457 -
Rops10g01253 550 CDD PP2Cc 238 540 IPR001932 -
Rops10g01253 550 FunFam Protein phosphatase 2C 16 224 550 - -
Rops10g01253 550 ProSitePatterns PPM-type phosphatase domain signature. 287 295 IPR000222 GO:0043169
Rops10g01253 550 Gene3D - 223 550 IPR036457 -
Rops10g01253 550 MobiDBLite consensus disorder prediction 58 79 - -
Rops10g01253 550 SMART PP2C_4 226 538 IPR001932 -
Rops10g01253 550 Pfam Protein phosphatase 2C 271 533 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01253 Rops-Chr10 25113110 25116717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01253 1 550 PP2C-type Phosphatase Gene Family AT1G17550 47.509 5.35e-162 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01253 K14497 - gmx:102662702 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g01253 10 25113110 25116717 Rops10g01253 10 25113110 25116717 ECH
Rops10g01253 10 25113110 25116717 Rops9g02013 9 37158277 37163325 ECH