Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g01247 ATGTCTACGCCGCAGCAACCATGCGGTGGCGCCTCGTCGCAAAATATCACATTGGTTGCTGTTGACAAAGACAAGAACAGTGCTCATGCCTTCCGTTGGGCCATTAATCATCTTGATAACCCCATCATCATCGCTGTCCATGTCAAACACAAAAACTTACCTCATCATGCCACTAATGTTTTTCCGCCGGATGAGGAGGATTCGGCCAATATTTTCAATCACTTACGTGGAATGTGTCATCGTAAAGCTGTCTCGATGAAAGAAGCAGTAATTGATGATCATGATGTTGTGAGAGGACTTTTAGATTTTGCAAACAGGAATGGGATACATAGTATTGTCATGGGTGCATCGAACAAGAACCCTTTGCAAAGTTTCAAAAAATTCAAAGGCTATCATGATATTCCAACAGCCGTGATCAAATCAGCCCCAGATTATTGCTCTGTATACATAATTTCCAAATTGAAGATTGTGGCTGCTCGATCAGCAATACGATTAATGGCTAAACCATTTAGCCCGCCAATACTACATCCATACCCACATAGTGAATCAGAAAATGGAGTAAGGGCACAAACACCTAGAAGTGGGGGCACAAATGGAAGATCAGAATCAAGGGTTTTTGAGAGCAATAATGCAATAAGAGCACATGTAAGGCCAAGGAGTGTGGGAAGTAATCATTCATTGGACAACATTGATCTACCTGGTCGTGCACGACATTGGTCAATGGATGAAAGAGACATTGCAGGGCTCATGTCAATGGATTTAACTAGAGATCTGGATCTGGATTTAAACGTTACATCAGATCCCCTTGGAACATCATCAGTTTCCCACACCTCAAGAGAACTCGAAGCTGAGATGAAAAGATTGAGGCTTGAACTGAAGCAAACTATGGACATGTACAGCTCAGCTTGCAAGCAAGCAATCTCGGCAAAAAATCAGGCTGAACAGATTCGTCAATGGAAACTGGAAGAGGAAGGTAAGGTTGAGGAAGTTAGGCTATCTCAAGAGGCAGCTCTTGCAATGGCAGAAAAGGAGAAGGCTATAGCAAGAGCTGCAATGGAAGCAGCTGAGGAAGCCAGGCAGAAGGCTGAACTGGAAGCACTGAAAAGAAGGGAATTAGAGATGATGGCCATGAAGGAAGCAGAAGAGAAGGATCGAGCATTAACCGTGTTGGCTCAAAATGATAATCGATATAGAAAATACACCATAGAGGAGATTGAAGCAGCCACTGAAAAGTTCACCCCATCAAAGAAAATAGGTGAAGGTGGATATGGACCTGTGTATAAAGGCCAATTGGATCACACCCCAGTTGCCATCAAAATTTTAAATCCTGATGCTTCTCAGGGCAGGAAGCAGTTCCAACAAGAGGTTGAGGTACTAAGCTGCATTAGACATCCAAATATGGTCCTTCTCCTTGGGGCCTGTCCTGAGCATGGGTGCTTGGTGTATGAATACATGGATAATGGTAGCTTAGAAGATAGATTATTTCGGAAAAATAACAGCCGGCCTATTTCATGGAGGAAAAGGTTCCAAATAGCTGCTGAGATTGCAACTGCACTCCTTTTCCTTCACCAAACAAGGCCAGAGCCCATTGTCCACAGAGACCTTAAACCAGCCAACATTCTATTGGACAGGAATTACGTGAGTAAAATCAGTGATGTTGGTCTTGCAAGATTGGTCCCACCTTCTGTAGCTGAAAGTGTCACACAATGTTACATGACTTCAGCTGCTGGAACCTTCTGTTATATTGATCCTCAGTATCAACAAACAGGAATGCTAACACCAAAATCAGATATATATTCTTTGGGGATAGTGCTACTTCAGATAATCACAGCCAAGCCTCCCATGGGTCTTACTCACCAAGTCAGGAGGGCAATTGAAAAGGACAAGTTTCAAGAGATACTTGACCCCATGGTGCCTGATTGGCCAGTTGAAGAGGCTCTAGCATTTGCCAAATTAGCATTGAGCTGTGCAGAGCTAAGCAAGAAGGACAGGCCAAATCTTGCAACAGTTGTATTGCCAGAACTTAACCGTTTAAGAGACCTTGGCAGTGATGATAATAAGAACAATAGCCATGCGGCACGCCCTCCCACACCTACCCGAAATCAAATGTCAAAGACGTTGAATAGGTGCTAG 2133 0.436 MSTPQQPCGGASSQNITLVAVDKDKNSAHAFRWAINHLDNPIIIAVHVKHKNLPHHATNVFPPDEEDSANIFNHLRGMCHRKAVSMKEAVIDDHDVVRGLLDFANRNGIHSIVMGASNKNPLQSFKKFKGYHDIPTAVIKSAPDYCSVYIISKLKIVAARSAIRLMAKPFSPPILHPYPHSESENGVRAQTPRSGGTNGRSESRVFESNNAIRAHVRPRSVGSNHSLDNIDLPGRARHWSMDERDIAGLMSMDLTRDLDLDLNVTSDPLGTSSVSHTSRELEAEMKRLRLELKQTMDMYSSACKQAISAKNQAEQIRQWKLEEEGKVEEVRLSQEAALAMAEKEKAIARAAMEAAEEARQKAELEALKRRELEMMAMKEAEEKDRALTVLAQNDNRYRKYTIEEIEAATEKFTPSKKIGEGGYGPVYKGQLDHTPVAIKILNPDASQGRKQFQQEVEVLSCIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNNSRPISWRKRFQIAAEIATALLFLHQTRPEPIVHRDLKPANILLDRNYVSKISDVGLARLVPPSVAESVTQCYMTSAAGTFCYIDPQYQQTGMLTPKSDIYSLGIVLLQIITAKPPMGLTHQVRRAIEKDKFQEILDPMVPDWPVEEALAFAKLALSCAELSKKDRPNLATVVLPELNRLRDLGSDDNKNNSHAARPPTPTRNQMSKTLNRC* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g01247 710 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 125 - -
Rops10g01247 710 MobiDBLite consensus disorder prediction 176 211 - -
Rops10g01247 710 Pfam Universal stress protein family 18 124 IPR006016 -
Rops10g01247 710 FunFam U-box domain-containing protein 51 485 685 - -
Rops10g01247 710 MobiDBLite consensus disorder prediction 184 208 - -
Rops10g01247 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Rops10g01247 710 Coils Coil 278 298 - -
Rops10g01247 710 Gene3D HUPs 10 148 IPR014729 -
Rops10g01247 710 SUPERFAMILY Protein kinase-like (PK-like) 395 671 IPR011009 -
Rops10g01247 710 Pfam Protein kinase domain 414 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01247 710 CDD STK_N 19 153 - -
Rops10g01247 710 PANTHER OS02G0152300 PROTEIN 17 692 - -
Rops10g01247 710 ProSiteProfiles Protein kinase domain profile. 412 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01247 710 CDD STKc_IRAK 418 678 - -
Rops10g01247 710 MobiDBLite consensus disorder prediction 688 710 - -
Rops10g01247 710 Gene3D Transferase(Phosphotransferase) domain 1 485 695 - -
Rops10g01247 710 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 385 484 - -
Rops10g01247 710 Coils Coil 338 375 - -
Rops10g01247 710 SMART serkin_6 412 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g01247 710 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Rops10g01247 710 MobiDBLite consensus disorder prediction 679 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g01247 Rops-Chr10 25064854 25069110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g01247 86 685 Receptor kinase-like Gene Family AT5G12000 58.537 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops10g01247 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g01247 - - gmx:100798861 955.666